PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG091700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 294aa MW: 32427.9 Da PI: 7.5025 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.8 | 1.8e-52 | 11 | 140 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhP+d+elv +yL +k++g+ + +i +vd++k+ePwdLp+++ + kewyfF rd+kyatg+r+nrat sgyWkatgkd+ Pavir.6NG091700.1.p 11 MPPGFRFHPRDDELVLDYLLNKLSGRAHGG-AAIVDVDLNKCEPWDLPEAACVGGKEWYFFNLRDRKYATGQRTNRATVSGYWKATGKDR 99 79*************************888.78***************7666789*********************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 +v++ + ++vg++ktLvfy+grapkg+kt+Wvmhe+rle Pavir.6NG091700.1.p 100 AVVAGgeDAAVVGMRKTLVFYRGRAPKGSKTEWVMHEFRLE 140 ***97555666***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-59 | 2 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.894 | 11 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-26 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSSISMMEAR MPPGFRFHPR DDELVLDYLL NKLSGRAHGG AAIVDVDLNK CEPWDLPEAA 60 CVGGKEWYFF NLRDRKYATG QRTNRATVSG YWKATGKDRA VVAGGEDAAV VGMRKTLVFY 120 RGRAPKGSKT EWVMHEFRLE PPPPPQPPSQ ERQLPAAAKH HRLKEDWVLC RVFYKSRTTN 180 PKLPSEDAQD GTPSTEPDLP AALPLAPLTD TNTAFGTVPT VTEQVSCFSG LPALPLKRRL 240 GDLLAFDTSE KVSIGTVMLS SMPSNSSSEL ELPPNCNWNH ENVLSQLWNP LGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-47 | 8 | 176 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG091700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958128 | 1e-134 | EU958128.1 Zea mays clone 1674566 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822017.1 | 1e-178 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 2e-73 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2T7D4J8 | 1e-177 | A0A2T7D4J8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00532.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 4e-66 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG091700.1.p |