PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG411900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 474aa    MW: 51160.7 Da    PI: 10.3808
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG411900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57393.62.1e-29223320297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                          +++r+ws eDe+++L +li+++ k+g    +s+d++++++++ +++ +++s++ql++K+rrLK+K++ +vk+ak+g+ p++ +ehd++++
  Pavir.6KG411900.1.p 223 RPSRVWSPEDEVTILNALIEYRLKEGRlpGSSQDTSKLHSQIYGRLTANASTTQLSDKVRRLKHKYRLQVKRAKNGRVPDLPTEHDRSVY 312
                          678***********************9888999********************************************************* PP

               DUF573  90 elskkiWg 97 
                          elskk+W+
  Pavir.6KG411900.1.p 313 ELSKKVWR 320
                          *******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-27225319IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MVLESSAAAA GTGSGSDGEA DADRFYSRRR SSIAPGAAPL SSTPTSAGAD VAAASDADAG  60
AGGRAPSPRR GDGKGPPSDH VDSDADADAG TGRRVPSPRR RGERSPSFHS GSDADAARGG  120
GRVPSPRRNR ERIPRLHSDS DSDNSVATAN FTATTSEDDG GGAGAASPSP RPRLSSPIKA  180
SGIMPIRARP MDVPCRDAAA SSDLRTKRRH SPIERRTPEY HKRPSRVWSP EDEVTILNAL  240
IEYRLKEGRL PGSSQDTSKL HSQIYGRLTA NASTTQLSDK VRRLKHKYRL QVKRAKNGRV  300
PDLPTEHDRS VYELSKKVWR LKSLEGRSLA HEETGDAESN EEKGIKESDE DMDNGGEHGE  360
RTSKKPKTSR FQNDNGNATL TVGRASHGSG RDSAEKGKQM YPYLWAAVEE LSKEHPSGPI  420
FRKVFGLLEK SKARVIEEKL RKFRMSVIRL QLNRMDLTKL SVGMVLDALG GAY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.202910.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG411900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821021.10.0serine/arginine repetitive matrix protein 1-like
TrEMBLA0A2S3I3580.0A0A2S3I358_9POAL; Uncharacterized protein
STRINGPavir.Fa00747.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-13DNA-binding storekeeper protein-related transcriptional regulator