PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG401200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 28457.7 Da PI: 8.5594 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl Pavir.6KG401200.1.p 14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed+l+v+++ +lG++ W++Ia++++ gRt++++k++w+++ Pavir.6KG401200.1.p 67 RGNFTADEDDLIVKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.558 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.159 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDDRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TADEDDLIVK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPVTHRPIA DAARNVTISF QPDAPSQQQL SDEAEAPPPP PPQQQQQLKP PPRCPDLNLD 180 LCISPPCHKE EEDQELVKPA AVKREMLQAG HGTLGLCFGC SLGLQKGAAG CTCSSNSHFL 240 GLRVGMLLDF RGLEMK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG401200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF299188 | 0.0 | JF299188.1 Panicum virgatum R2R3-MYB transcriptional factor PvMYB4d mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822035.1 | 1e-155 | myb-related protein Zm38-like | ||||
Swissprot | P20025 | 1e-126 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | G0ZKW0 | 0.0 | G0ZKW0_PANVG; R2R3-MYB transcriptional factor PvMYB4d | ||||
STRING | Pavir.J16675.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-94 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG401200.1.p |
Publications ? help Back to Top | |||
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