PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG399600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SRS

Protein Properties

Length: 306aa MW: 31278.4 Da PI: 8.2467

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG399600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.4	3.2e-67	103	246	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 +gt+sCqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaakrrerqqqla+ a++ skr+r+ ++ s++++t++s Pavir.6KG399600.1.p 103 AGTISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQQLATG--------AAEPSKRPRDA-GAQPSSTTATTTS 183 6899***********************************************9997........56789999997.4555555566666 PP DUF702 93 saeskke..letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s+e++++ + +++P+evsseavfrcvr++ vd++ +e+aYqt+vsi+GhvfkGiL+d G++ Pavir.6KG399600.1.p 184 SGEQQQQmaMVGERYPREVSSEAVFRCVRLGPVDEAYAEVAYQTTVSIAGHVFKGILHDVGPD 246 66655551155678*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.8E-61	105	246	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.3E-28	107	149	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.1E-22	197	245	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAGFPLGGGG GGGHHGRGGG DHHHHYPHVS PSSGSDSAAA AAAAYLYTTA AAAPRGGGFQ 60 LWPHHPVQEH HFYAPNIIRF ADDPAAGSSS SRSGRGSASG AGAGTISCQD CGNQAKKDCA 120 HMRCRTCCKS RGFDCPTHVK STWVPAAKRR ERQQQLATGA AEPSKRPRDA GAQPSSTTAT 180 TTSSGEQQQQ MAMVGERYPR EVSSEAVFRC VRLGPVDEAY AEVAYQTTVS IAGHVFKGIL 240 HDVGPDPSAA AAGGFRHAAE GSSPSTAAAG EGSVAGPVSS SAVVMDPYPT PGPYGGPPFF 300 HGHPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG399600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968773	0.0	EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821984.1	1e-155	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A3L6PPK2	1e-160	A0A3L6PPK2_PANMI; Protein SHI RELATED SEQUENCE 1-like
STRING	Pavir.Fa00216.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-49	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Pavir.6KG399600.1.p