PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG394000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 27507.3 Da PI: 7.2006 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.3e-13 | 105 | 151 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RRd++N f Lr +P+ +++Ka+ L A YI +L Pavir.6KG394000.1.p 105 VTHVEAERQRRDKLNRLFCDLRATVPTV-----SRMDKASLLADAAAYIAQL 151 68*************************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.07E-15 | 101 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.792 | 102 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-10 | 105 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.84E-10 | 105 | 152 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-15 | 106 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-10 | 108 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDVLELELVR PASTTCSSPS PASIFSTAGH HHQEPGFVSS EALERWLGMD DSMLDDGPLL 60 EDGGDEASQA PGNEERLSGR LPAAPPAPKR RGRKPGPRSK GTAAVTHVEA ERQRRDKLNR 120 LFCDLRATVP TVSRMDKASL LADAAAYIAQ LRGRVAQLEA ENKLAAAAAA AAPVQENLEV 180 RMVGSEAAEL RLTTAARHAP ARFMLALRWL DLPVQHASVC LVGGMTVQSA VVDVPAAVLR 240 DERALRAALL HRLQQTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-17 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-17 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-17 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-17 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-17 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-17 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-17 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-17 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG394000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822542.1 | 5e-93 | transcription factor MYC3-like | ||||
TrEMBL | A0A3L6RK90 | 2e-98 | A0A3L6RK90_PANMI; Transcription factor MYC2-like | ||||
STRING | Pavir.Fa00118.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 3e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG394000.1.p |