PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG365700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 345aa    MW: 36750.1 Da    PI: 7.5182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG365700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.1e-51281551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL++kv +  +     i+evd++++ePw+Lp +++ +e+ewyf s rd+ky+tg r+nrat++gyWkatgkd+
  Pavir.6KG365700.1.p  28 LPPGFRFHPTDEELVTFYLAAKVLNGACCG-VDIAEVDLNRCEPWELPDAARMGEREWYFLSLRDRKYPTGMRTNRATAAGYWKATGKDR 116
                          79************************9777.34***************8888899*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          evls+ +g+l g+kktLvfykgrap+gekt+Wv+heyrl
  Pavir.6KG365700.1.p 117 EVLSAaTGALLGMKKTLVFYKGRAPRGEKTKWVLHEYRL 155
                          ***9978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6118178IPR003441NAC domain
PROSITE profilePS5100557.33428178IPR003441NAC domain
PfamPF023651.2E-2629155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MHRQAMGDAL LDLLGEEMAA AAAGEHGLPP GFRFHPTDEE LVTFYLAAKV LNGACCGVDI  60
AEVDLNRCEP WELPDAARMG EREWYFLSLR DRKYPTGMRT NRATAAGYWK ATGKDREVLS  120
AATGALLGMK KTLVFYKGRA PRGEKTKWVL HEYRLDGDFA AARRSCKEEW VICRILHKAG  180
DQYSKLMMVK SPYYLPMGVD PSSLCFQQDP AAAPPLPNPS GCSTAGLPFH HGHHPGMHPP  240
LLPANQLKLS NGCGFPASAC TQEPPPSGCG GSSNAAMGMP PPYPPPFTSI VAGKPAAPPP  300
HAAGVVSAGA PEPPAPPPTS WLEAYVQHGG FLYEMGPGAA PRGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-472817817165NO APICAL MERISTEM PROTEIN
1ut4_B7e-472817817165NO APICAL MERISTEM PROTEIN
1ut7_A7e-472817817165NO APICAL MERISTEM PROTEIN
1ut7_B7e-472817817165NO APICAL MERISTEM PROTEIN
3swm_A7e-472817820168NAC domain-containing protein 19
3swm_B7e-472817820168NAC domain-containing protein 19
3swm_C7e-472817820168NAC domain-containing protein 19
3swm_D7e-472817820168NAC domain-containing protein 19
3swp_A7e-472817820168NAC domain-containing protein 19
3swp_B7e-472817820168NAC domain-containing protein 19
3swp_C7e-472817820168NAC domain-containing protein 19
3swp_D7e-472817820168NAC domain-containing protein 19
4dul_A7e-472817817165NAC domain-containing protein 19
4dul_B7e-472817817165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.181710.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
UniprotTISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269|PubMed:12837947}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG365700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612700.0BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822038.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8512e-89NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2T7D9C00.0A0A2T7D9C0_9POAL; Uncharacterized protein
STRINGPavir.Fa00438.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-88NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]