PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG360400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 22605.7 Da PI: 9.48 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.7 | 1.9e-10 | 68 | 116 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr + +g W++eIr+p + r+r ++g f t +Aa a++aa +++ge Pavir.6KG360400.1.p 68 TGVRARL-WGGWAVEIRVPLS---RQRLWVGAFETDRQAALAYDAALFCFYGE 116 5999877.**********843...4**********99***********99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.3E-12 | 66 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-12 | 66 | 119 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.899 | 66 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-5 | 67 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-19 | 67 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-6 | 68 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.07E-15 | 69 | 129 | No hit | No description |
PRINTS | PR00367 | 9.1E-5 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSTHGAYKTE PFPLRRPVLA PSQSLYYLSP SSAVSCSLLD GEEGGAGPER WRRAAAAARQ 60 LKKRSAWTGV RARLWGGWAV EIRVPLSRQR LWVGAFETDR QAALAYDAAL FCFYGEDLPK 120 KRGFNFPAAP RPDIDEDVRA GLSVAAVKDI ANKHARGLQL GLAIAPPACT AAEPLQQAAA 180 AAGPSAGADA PAAGYHGRNP NAEVETTLRL CL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG360400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6RGQ3 | 1e-65 | A0A3L6RGQ3_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fa00469.1.p | 1e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 1e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG360400.1.p |