PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG350800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 228aa    MW: 26151.9 Da    PI: 8.2811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG350800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171057148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed +lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Pavir.6KG350800.1.p 10 KGPWTEQEDMQLVCTVRRFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 57
                         79********************************************97 PP
2Myb_DNA-binding56.85e-1864108248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          gr++++E+ l++++++q+G++ W++Iar+++ gRt++++k++w++++
  Pavir.6KG350800.1.p  64 GRMSPQEERLIIELHAQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                          89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.449557IPR017930Myb domain
SuperFamilySSF466896.83E-308104IPR009057Homeodomain-like
SMARTSM007171.3E-14959IPR001005SANT/Myb domain
PfamPF002492.8E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-201164IPR009057Homeodomain-like
CDDcd001679.11E-111257No hitNo description
PROSITE profilePS5129426.84658112IPR017930Myb domain
SMARTSM007175.8E-1762110IPR001005SANT/Myb domain
PfamPF002496.7E-1664107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2465111IPR009057Homeodomain-like
CDDcd001672.40E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVTVREEMRK GPWTEQEDMQ LVCTVRRFGD RRWDFIAQVS GLNRTGKSCR LRWVNYLHPS  60
LKHGRMSPQE ERLIIELHAQ WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKMSIS  120
PSSSSSLTYQ SCLIDTSPII GMGSGDTPNG SACVTSTLES TQSSMDAYPM DQIWREIEAP  180
ALLGTAEGKE KTCSSIPCTL PSPAMWDYSC PEIFWKMEDE EIRMLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2871121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.246400.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG350800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3874100.0KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980031.11e-148myb-related protein MYBAS1
SwissprotQ53NK61e-124MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A3L6RGN41e-149A0A3L6RGN4_PANMI; Myb-related protein MYBAS1-like
STRINGPavir.J33560.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-72myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]