PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG332200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 282aa    MW: 29231.6 Da    PI: 9.8533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG332200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-0684103221
                          EETTTTEEESSHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                          +C+ Cgk+F+++  L  H+r
  Pavir.6KG332200.1.p  84 PCTECGKVFKSWKALFGHMR 103
                          5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.76483110IPR007087Zinc finger, C2H2
SuperFamilySSF576675.65E-883105No hitNo description
SMARTSM003550.003183105IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-985107IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-485105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.65E-8189216No hitNo description
PfamPF139122.2E-10194218IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369194216IPR007087Zinc finger, C2H2
SMARTSM003551.2194216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MATPVLPAAS PPPRPPPPPP PPPPHRPYHD TTLTLALALP PPPFACALSP RPLQARRPRA  60
DGVASSSSSA FARVRSSPTG DPPPCTECGK VFKSWKALFG HMRCHPERQW RGITPPPHFQ  120
HQAVGGAHLA VAAAAGDQFT VQERETAASL LMLSATRPGV GKGKKSTLAT SSAKKESCST  180
PTTAGAPPPR CDGHKCSVCA RGFATGQALG GHKRCHWERD CAEGMAVAAP SSCSTLAALS  240
GAAPATTLDL NLPPPGTMPP LPRKIDEDRS LNAALDLRLG L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG332200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751889e-34EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682354.11e-121zinc finger protein ZAT3
TrEMBLA0A2T7D8W91e-129A0A2T7D8W9_9POAL; Uncharacterized protein
STRINGPavir.Fa00593.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-26C2H2-like zinc finger protein