PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG312500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 278aa MW: 29263.3 Da PI: 4.6893 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 55 | 108 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q+++Le+ Fe ++++ e++++LA lgL+ rqV vWFqNrRa++k Pavir.6KG312500.1.p 55 KKRRLSTDQVRALERSFETENKLEPERKARLALDLGLQPRQVAVWFQNRRARWK 108 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.4 | 1.6e-42 | 54 | 146 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrls++qv++LE+sFe+e+kLeperK++la +LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e Pavir.6KG312500.1.p 54 EKKRRLSTDQVRALERSFETENKLEPERKARLALDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRADHDALRRDKDTLLAE 143 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +ke Pavir.6KG312500.1.p 144 IKE 146 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-19 | 41 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.9E-18 | 53 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.64E-18 | 55 | 111 | No hit | No description |
Pfam | PF00046 | 3.0E-16 | 55 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 57 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.6E-5 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.6E-5 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-17 | 110 | 151 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MKRPNSSVSG GGGGGSGSPG LLPPVVHSDD GFGGVGVEEA DEDMVLCGGG GGGEKKRRLS 60 TDQVRALERS FETENKLEPE RKARLALDLG LQPRQVAVWF QNRRARWKTK QLERDYAALR 120 HSYDALRADH DALRRDKDTL LAEIKELKAK LGDEDAAASF SSVKEEPAAS GVEPPAAAAQ 180 GSSDSDSSGV VNDADMMAAP EKASVHPPAG AAAGAEALVP GAALHHGEVF FHGHPLKVED 240 DEAAFLGDDD AACGGFFADL QPPPSLPWWT EPTEHWA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 85 | ERKARLA |
2 | 102 | 110 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1623 | 1e-138 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG312500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091872 | 0.0 | FP091872.1 Phyllostachys edulis cDNA clone: bphylf046i13, full insert sequence. | |||
GenBank | FP092398 | 0.0 | FP092398.1 Phyllostachys edulis cDNA clone: bphylf024g13, full insert sequence. | |||
GenBank | FP094421 | 0.0 | FP094421.1 Phyllostachys edulis cDNA clone: bphylf034o12, full insert sequence. | |||
GenBank | FP095796 | 0.0 | FP095796.1 Phyllostachys edulis cDNA clone: bphylf053b02, full insert sequence. | |||
GenBank | FP096314 | 0.0 | FP096314.1 Phyllostachys edulis cDNA clone: bphylf059i02, full insert sequence. | |||
GenBank | FP097208 | 0.0 | FP097208.1 Phyllostachys edulis cDNA clone: bphylf060f04, full insert sequence. | |||
GenBank | FP098554 | 0.0 | FP098554.1 Phyllostachys edulis cDNA clone: bphyst007g13, full insert sequence. | |||
GenBank | FP099955 | 0.0 | FP099955.1 Phyllostachys edulis cDNA clone: bphyst012d13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822160.1 | 1e-155 | homeobox-leucine zipper protein HOX20-like | ||||
Swissprot | A2YWC0 | 1e-116 | HOX20_ORYSI; Homeobox-leucine zipper protein HOX20 | ||||
Swissprot | Q6Z248 | 1e-116 | HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20 | ||||
TrEMBL | A0A2S3I3D9 | 1e-154 | A0A2S3I3D9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D8P0 | 1e-154 | A0A2T7D8P0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa00633.1.p | 1e-167 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3009 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 9e-40 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG312500.1.p |
Publications ? help Back to Top | |||
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