PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG278500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 229aa    MW: 24043.3 Da    PI: 6.7827
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG278500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14e-221865249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         rie++  rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + +
  Pavir.6KG278500.1.p 18 RIESDEARQVCFSKRRAGLFKKASELSILCGADVAAVVFSPAGKAFSF 65
                         8******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.717969IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-35968IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-29981IPR002100Transcription factor, MADS-box
CDDcd002651.08E-411081No hitNo description
PRINTSPR004043.0E-201131IPR002100Transcription factor, MADS-box
PfamPF003193.1E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAPPRRPSMG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCGAD VAAVVFSPAG  60
KAFSFGHPSV ESILDRFLDT SPGAGAGLSS AGDHAVSELN RQYGELRAQL DDEKVRQERA  120
DETIRKERAA RSQAMAWLDA DLGAMGHDDL VAFWGALIGV QAAVAASADQ LLRDALLVGC  180
RGRQPPQLAG GVAFDVAAFG VGMQPPPGLA GVDLNGFGGQ ATILGPSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-16982174MEF2 CHIMERA
6byy_B5e-16982174MEF2 CHIMERA
6byy_C5e-16982174MEF2 CHIMERA
6byy_D5e-16982174MEF2 CHIMERA
6bz1_A5e-16982174MEF2 CHIMERA
6bz1_B5e-16982174MEF2 CHIMERA
6bz1_C5e-16982174MEF2 CHIMERA
6bz1_D5e-16982174MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG278500.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626541e-124EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806827.11e-149agamous-like MADS-box protein AGL29
TrEMBLA0A2T7EG151e-149A0A2T7EG15_9POAL; Uncharacterized protein
STRINGPavir.J00788.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-34AGAMOUS-like 61