PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG271000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 38705.3 Da PI: 6.6266 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146 | 2e-45 | 16 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrF Ptdeel+++yL++k+ + +++ +i++vd+yk+ePwdLp + +e yfF++r +ky +g r++rat+ gyWk+tgkdk Pavir.6KG271000.2.p 16 LPAGFRFFPTDEELITCYLARKAMDASFTS-PAIRDVDLYKSEPWDLPC----DLQEGYFFCTRGSKYLSGVRARRATRCGYWKSTGKDK 100 799************************999.78***************3....44789******************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+ ++g+lvg +ktLvfy+grap+gekt W mhey++ Pavir.6KG271000.2.p 101 AVHGRDGRLVGRRKTLVFYRGRAPRGEKTGWAMHEYAM 138 ************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-51 | 11 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.825 | 16 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-24 | 17 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MLASGAERRR MDHQLLPAGF RFFPTDEELI TCYLARKAMD ASFTSPAIRD VDLYKSEPWD 60 LPCDLQEGYF FCTRGSKYLS GVRARRATRC GYWKSTGKDK AVHGRDGRLV GRRKTLVFYR 120 GRAPRGEKTG WAMHEYAMGE RSSSALLRGA QSEWVICKVF MRKHPRGNER KVTAEETVHD 180 QDSTPGHLLP MVLVPDADGF DGHEQEVAPP AAVADSQHTI SRSGAHVIEG NEKDHHQQHH 240 HHQMVHELLM IDHHGWSGAA SPSLFNHDGQ LGMHCSTLPV MQKQSDDADY YLPELLESDG 300 SDDLPSNAGS GLLDTGGEVN RRAEMITSAA IDPLHIDGLY WNNFGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-38 | 16 | 164 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG271000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040387 | 2e-87 | BT040387.1 Zea mays full-length cDNA clone ZM_BFc0088H11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822427.1 | 1e-158 | NAC domain-containing protein 79-like | ||||
TrEMBL | A0A1E5UJH1 | 0.0 | A0A1E5UJH1_9POAL; NAC domain-containing protein 100 | ||||
STRING | Pavir.Fa00876.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-57 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG271000.2.p |