PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG255300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 460aa MW: 47521.5 Da PI: 7.7852 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 5.1e-32 | 261 | 314 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pavir.6KG255300.1.p 261 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 314 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.87E-15 | 258 | 315 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 259 | 315 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 261 | 314 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.9E-7 | 262 | 313 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MEARAASAPD LSLHISLPSS AASPPSAPGR LGAAAVGGRG AQPAAGGDPW RRLNGSTAST 60 ELSLSPPPRQ QEAAGGDVLP WRLRPPAANY CSPSSSSAAT AQAAAPFVPV TVPRLSLDAA 120 AEAAARARPI NGVPVYSSPR AAGHPFLGAA GDYRQGHPKV GLYNPYHASS WPSALRSTTT 180 TSPTAVAPSA SDPAAAVFLS PSAYHRMLSG TGRLHLHGVL ADTFRGYGGG HQQQQQQHFG 240 SLASARYMPK FPASRRGMRA PRMRWTSSLH ARFVHAVELL GGHERATPKS VLELMDVKDL 300 TLAHVKSHLQ MYRTVKSTDK PATSSGPVDG GGSGDDDLPD AGQAPSAGDD ASPQPFTAHR 360 SASSEGAASH AGGDVECSSA EDSDGGRARS GASSRDQWPP PAACNVDTHR SVGISSTIED 420 MEPCGSVGLH QVPNHEMNCP SPSLEFTLGR ANWNVAEHD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 262 | 316 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 262 | 316 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 262 | 316 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 262 | 316 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17822 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG255300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU935003 | 1e-174 | EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds. | |||
GenBank | JX469982 | 1e-174 | JX469982.1 Zea mays subsp. mays clone UT3342 G2-like transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820099.1 | 0.0 | probable transcription factor RL9 isoform X1 | ||||
Swissprot | Q0J235 | 1e-98 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A3L6RKZ8 | 0.0 | A0A3L6RKZ8_PANMI; Putative transcription factor RL9 | ||||
STRING | Pavir.Fa01637.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 8e-43 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG255300.1.p |