PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG188400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 305aa    MW: 31096 Da    PI: 10.6881
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG188400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31238295359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YYrC+sa gCp++k+ver+a+dp ++++tYeg+H+h+
  Pavir.6KG188400.1.p 238 DDYSWRKYGQKPIKGSPYPRGYYRCSSAkGCPARKHVERAADDPATLVVTYEGDHRHD 295
                          99************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31228296IPR003657WRKY domain
PROSITE profilePS5081131.973231297IPR003657WRKY domain
SuperFamilySSF1182902.48E-26233295IPR003657WRKY domain
SMARTSM007742.1E-36236296IPR003657WRKY domain
PfamPF031061.8E-26238294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAVDLMSCGG GGAYEHLAFQ EAAAAGLRSL ELLASSLSPR AGSPPLGQIA DQAVSRFRRV  60
INLLDRTGHA RFRRAPAAPP ATPPESPRPA PVPQPPAAAA PTTKSLTLDF TKPPPAVAAK  120
APAPAPAASA TSTSFLSSVT AGGEGSVSKG CSLQAAVSSG KPPLPKRKHP AAASAAAAAA  180
HQHHHQAEAE PGAAARCHCA RKPKRSRQGL SRRTVRVAAA GAQAASSHAP ASSDIPGDDY  240
SWRKYGQKPI KGSPYPRGYY RCSSAKGCPA RKHVERAADD PATLVVTYEG DHRHDAAAGA  300
ARAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-22218295475Probable WRKY transcription factor 4
2lex_A5e-22218295475Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG188400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822145.11e-141WRKY transcription factor WRKY51-like
TrEMBLA0A1E5VBK61e-148A0A1E5VBK6_9POAL; Putative WRKY transcription factor 11
STRINGPavir.Fa01441.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-34WRKY DNA-binding protein 11