PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG106700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26476.2 Da PI: 9.4379 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.4 | 1.3e-18 | 131 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +t+s+v+ +l lp +f++++ + +++ t++lede+ ++e + +rk + l++GW++F+ +++L +gD +vF+l++r++f Pavir.6KG106700.1.p 131 FVKPMTQSHVTGGFWLGLPTPFCRKYL-P-KRDETIMLEDEEDDEFETLYLVRKMG----LSAGWRGFAIEHKLVDGDCLVFQLIERTKF 214 89************************5.3.35669***************555544....*************************98888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v ++r+ Pavir.6KG106700.1.p 215 --KVYIIRA 221 ..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.35E-23 | 125 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-21 | 125 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-22 | 129 | 220 | No hit | No description |
Pfam | PF02362 | 2.9E-16 | 131 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.871 | 131 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-20 | 131 | 222 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAEAVSYEEQ RRRQVEANKR KLEELQLHHL SAAVREAAAK PSPAKKRTAR VPRDAAAEPL 60 RRSGRVANLP EKPKYREEVL DFGRKVRRTY GSGRKDLVNR VYATDEERSH AITKAEELAG 120 ELGSRSRFPI FVKPMTQSHV TGGFWLGLPT PFCRKYLPKR DETIMLEDEE DDEFETLYLV 180 RKMGLSAGWR GFAIEHKLVD GDCLVFQLIE RTKFKVYIIR ASSYYEDEE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.31758 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG106700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972573.1 | 1e-149 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 1e-122 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A368RHI4 | 1e-148 | A0A368RHI4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J28012.1.p | 1e-158 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 8e-63 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG106700.1.p |
Publications ? help Back to Top | |||
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