PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG096000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 296aa    MW: 32487.9 Da    PI: 7.1655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG096000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51111441129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +ppGfrFhP+d+elv +yL +k++g+ +    ++ +vd++k+ePwdLp+++  + kewyfF  rd+kyatg+r+nrat+sgyWkatgkd+
  Pavir.6KG096000.1.p  11 MPPGFRFHPRDDELVLDYLLHKLSGHAHGG-AAMVDVDLNKCEPWDLPEAACVGGKEWYFFNLRDRKYATGQRTNRATASGYWKATGKDR 99 
                          79*************************888.78***************7666789*********************************** PP

                  NAM  91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +v++       + ++vg++ktLvfy+grapkg+kt+Wvmhe+rle
  Pavir.6KG096000.1.p 100 AVVAGgegegeGAAVVGMRKTLVFYRGRAPKGSKTEWVMHEFRLE 144
                          ***986665555555***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-592175IPR003441NAC domain
PROSITE profilePS5100555.46211175IPR003441NAC domain
PfamPF023654.4E-2612143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSSISMMEAR MPPGFRFHPR DDELVLDYLL HKLSGHAHGG AAMVDVDLNK CEPWDLPEAA  60
CVGGKEWYFF NLRDRKYATG QRTNRATASG YWKATGKDRA VVAGGEGEGE GAAVVGMRKT  120
LVFYRGRAPK GSKTEWVMHE FRLEPPPPSQ ERRPPAAARH HRLKEDWVLC RVFYKSRTTN  180
PKLPSEDAQD GTPSTEPDLP ASLPLAPLTD TYTAFSAAST VTEQVSCFSG LPALPLKRPV  240
SLGDLLAFDT SEKVSIGTVM LSSMPSNSSS VLELPQNCNW NLENVLSQLW NPLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-48617612166NO APICAL MERISTEM PROTEIN
1ut4_B6e-48617612166NO APICAL MERISTEM PROTEIN
1ut7_A6e-48617612166NO APICAL MERISTEM PROTEIN
1ut7_B6e-48617612166NO APICAL MERISTEM PROTEIN
3swm_A6e-48617615169NAC domain-containing protein 19
3swm_B6e-48617615169NAC domain-containing protein 19
3swm_C6e-48617615169NAC domain-containing protein 19
3swm_D6e-48617615169NAC domain-containing protein 19
3swp_A6e-48617615169NAC domain-containing protein 19
3swp_B6e-48617615169NAC domain-containing protein 19
3swp_C6e-48617615169NAC domain-containing protein 19
3swp_D6e-48617615169NAC domain-containing protein 19
4dul_A6e-48617612166NAC domain-containing protein 19
4dul_B6e-48617612166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11654e-33root
Pvr.339864e-33root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG096000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581281e-119EU958128.1 Zea mays clone 1674566 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822017.11e-177NAC domain-containing protein 21/22-like
SwissprotQ84TE64e-75NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2T7D4J81e-176A0A2T7D4J8_9POAL; Uncharacterized protein
STRINGPavir.Fa02065.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.17e-70NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]