PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG062500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 363aa    MW: 38342.3 Da    PI: 7.5178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG062500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08100125127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC+ f++ GtC+y  +C+FaHg+
  Pavir.6KG062500.1.p 100 FKTKLCCKFRA-GTCPYITNCNFAHGM 125
                          69*********.*************95 PP
2zf-CCCH18.24.6e-06178203126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          yk + C+ f+    C+yGd C+F H+
  Pavir.6KG062500.1.p 178 YKGRHCKKFYTEEGCPYGDACTFLHD 203
                          78888********************7 PP
3zf-CCCH43.45.8e-14241266126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  Pavir.6KG062500.1.p 241 WKTRICNKWEMTGYCPFGSKCHFAHG 266
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-1497132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-897130IPR000571Zinc finger, CCCH-type
SMARTSM003560.001699125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.73799126IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5100125IPR000571Zinc finger, CCCH-type
SMARTSM003560.3177204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8177205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629177205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7177205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-17236270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10237271IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9240267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422240268IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11241266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAAPSAGGDS AIWATEDDYR QWNNDPGYGD RNPSSRAGSE  60
QPPPGKKSRG GAGGSGAGGG GDGGGSNSTS KSRAIGKMFF KTKLCCKFRA GTCPYITNCN  120
FAHGMEELRK PPPNWQEIVA AHEEATEQRE EHQIPIMTSG SVVAGDGGGG GSQGGRAYKG  180
RHCKKFYTEE GCPYGDACTF LHDEQSKARE SVAISLSPTV GSGGYNPSTV TVGMVQKPSN  240
WKTRICNKWE MTGYCPFGSK CHFAHGAAEL HKYGGGLVDI DSRDAASTPD SKQAGASAKA  300
PADSAAASTA MPPHADVYHL GIQSQRSTIV SQRSGHVQRP IQKWKGPDKI SRIYGDWIDE  360
NE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17485SGAGGGGDGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.6870.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG062500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822166.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3L6PQV50.0A0A3L6PQV5_PANMI; Uncharacterized protein
STRINGPavir.Fa01880.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-101C3H family protein