PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG043600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 143aa MW: 16334.6 Da PI: 8.1069 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.6 | 8.1e-17 | 51 | 130 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ +++++p kfa+++ g+ s ++le ++g+ ++v++ ++ ++ v++ GW F++a +L++gD++vF++ g+s f +v ++ Pavir.6KG043600.2.p 51 FQ-QQMIVPEKFAKNFRGQ--ISGVVKLEAPDGNLYSVNV--SQDLNKLVFRYGWGTFCSAYELEQGDMLVFRYRGDSHF--KVLIY 130 44.46999*****988777..5669***************..999999**************************999999..66555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.65E-22 | 36 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-22 | 37 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.238 | 40 | 133 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.97E-22 | 41 | 131 | No hit | No description |
SMART | SM01019 | 2.9E-10 | 43 | 133 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-15 | 45 | 130 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MASRDPEVHG MSAHEMSGNS SKRCSHCDSH YYWHHLDDRQ KHFFKLMLGD FQQQMIVPEK 60 FAKNFRGQIS GVVKLEAPDG NLYSVNVSQD LNKLVFRYGW GTFCSAYELE QGDMLVFRYR 120 GDSHFKVLIY SPRIIVLAAA AP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG043600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176100.1 | 9e-51 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176101.1 | 9e-51 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176102.1 | 9e-51 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176103.1 | 9e-51 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176104.1 | 9e-51 | B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_020176105.1 | 7e-51 | B3 domain-containing protein LOC_Os12g40080-like isoform X2 | ||||
Swissprot | Q2QMT6 | 2e-37 | Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080 | ||||
TrEMBL | A0A2T7EIN7 | 7e-78 | A0A2T7EIN7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa02304.1.p | 1e-104 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG043600.2.p |