PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG595900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 26913.2 Da PI: 8.505 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108 | 1.2e-33 | 22 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.k.......kvkaeekewyfFskrdkkyatgkrknratksg 81 lp GfrF+Ptdeel+ +yL++k+ + +l++ +i+++d+ +++PwdL p + +a+ ++ +f+ ++ + ++g ra+ +g Pavir.5NG595900.1.p 22 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDADLARLHPWDLlPpAgggggggGGDADGERFFFYRPATRCWRKGGGVARAAGTG 110 699***************************.99**************63346777654223344456777778888889*********** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +W+ +gk+k v+s ++ vg+k+tLvf +gra+ + +tdW mheyrl Pavir.5NG595900.1.p 111 VWRPSGKEKLVVSPrCKRPVGTKRTLVFCRGRARGAARTDWAMHEYRL 158 ************9877889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-45 | 13 | 196 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.876 | 22 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-20 | 23 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEGRPGGAWR MQGPAGAPVA GLPIGFRFRP TDEELLLHYL RRKALACPLP AGIIPDADLA 60 RLHPWDLLPP AGGGGGGGGG DADGERFFFY RPATRCWRKG GGVARAAGTG VWRPSGKEKL 120 VVSPRCKRPV GTKRTLVFCR GRARGAARTD WAMHEYRLLP AGLHPFHGCA AAGSSTATHV 180 SCHGAAADWV VCRIFKRTKP AAHRGREDDD AEEMPSSPSS ASSCVTDTSE AGDQEHDDDE 240 GSSSNGGGSS CSVASN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-26 | 21 | 197 | 14 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4398 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG595900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 1e-148 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817662.1 | 1e-142 | NAC domain-containing protein 83-like isoform X1 | ||||
TrEMBL | A0A3L6SID0 | 1e-142 | A0A3L6SID0_PANMI; NAC domain-containing protein 83-like isoform X1 | ||||
STRING | Pavir.Eb03721.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 6e-31 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG595900.1.p |