PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG586200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 185aa MW: 19020.3 Da PI: 7.254 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 42 | 2e-13 | 98 | 128 | 1 | 32 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkti 32 k+r++WtpeLH+rFveav++L G + A+Pk+i Pavir.5NG586200.1.p 98 KARMVWTPELHHRFVEAVAHL-GDKGAVPKAI 128 68*******************.999*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.4E-5 | 96 | 129 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-11 | 97 | 128 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-10 | 98 | 128 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MGAGSGASGR VLEWEAGLPD ASELTPVSHP LITPALAAAF RINIAGGAFP PAAASPLDDS 60 ALAHDSPTSH LRGGGGGWEA EDAASGSGAC RGGRAGKKAR MVWTPELHHR FVEAVAHLGD 120 KGAVPKAIPP PPSFLTAYGS PFNPHPPSDA SNQRGYCSFP SRDCEKLERD HALQAMGWKR 180 AKDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG586200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066659 | 6e-40 | AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence. | |||
GenBank | AP003251 | 6e-40 | AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05. | |||
GenBank | AP014957 | 6e-40 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 6e-40 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815041.1 | 6e-90 | transcription factor PCL1-like | ||||
Swissprot | Q94DH3 | 2e-19 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A2T7DEJ3 | 2e-90 | A0A2T7DEJ3_9POAL; Uncharacterized protein | ||||
STRING | Si002016m | 1e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 7e-09 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG586200.1.p |