PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG584100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 341aa    MW: 35842.5 Da    PI: 9.6477
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG584100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.3e-2142101357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++tkeq+ +Le l+e   r+psae+++++A++l    +++ ++V++WFqN++a++++
  Pavir.5NG584100.1.p  42 SRWNPTKEQVAVLEGLYEHgLRTPSAEQIKQIAARLlehgHIEGKNVFYWFQNHKARQRQ 101
                          7*****************99**************************************96 PP
2Wus_type_Homeobox110.11.3e-3541103365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++RW+Pt+eQ+ +Le ly++GlrtP++e+i++i+a+L e+G+ie+kNVfyWFQN+kaR+rqkq
  Pavir.5NG584100.1.p  41 NSRWNPTKEQVAVLEGLYEHGLRTPSAEQIKQIAARLLEHGHIEGKNVFYWFQNHKARQRQKQ 103
                          79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.04637102IPR001356Homeobox domain
SMARTSM003899.7E-639106IPR001356Homeobox domain
SuperFamilySSF466897.27E-1341109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-842101IPR009057Homeodomain-like
PfamPF000461.4E-1842101IPR001356Homeobox domain
CDDcd000864.79E-843103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEAPQQGGGA LGLEGPGGAG AGAPLSPPLS PASTAAAALA NSRWNPTKEQ VAVLEGLYEH  60
GLRTPSAEQI KQIAARLLEH GHIEGKNVFY WFQNHKARQR QKQKQDSFAY FTRLLRRPPP  120
LPMLVRPPGP PFPHGRLPVP AAPAMATMAP PPPAAAAACN TSTAGNTHAA VMYRAPFYMP  180
APQAPAASAA YYHTVQEQQQ MLLHHQQQQQ WPVMYPRMAV AQDKMIPAAA PQQHQQPPSH  240
PGAAVYQSAA APGNARSAAP LHVVHLPAAD AGGPSRETLQ LFPLQPTFLL PDKGRAAGTS  300
ASTASASFSV ESESSGSPDS NGDAPAVPFY DFFGLQSGGR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG584100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902351e-116AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBankBT0370091e-116BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBankEU9540621e-116EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBankKJ7283841e-116KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814413.11e-139WUSCHEL-related homeobox 5-like
TrEMBLA0A2T7DEM51e-145A0A2T7DEM5_9POAL; Uncharacterized protein
STRINGPavir.Eb03715.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-33WUSCHEL related homeobox 2