PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG582600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 556aa    MW: 60190.3 Da    PI: 8.2957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG582600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-1765111148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEde l +av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Pavir.5NG582600.1.p  65 KGGWTPEEDETLRKAVETFNGRNWKKIAEFFH-DRTEVQCLHRWQKVL 111
                          688*****************************.************986 PP
2Myb_DNA-binding61.41.9e-19117163148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd++++d+v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Pavir.5NG582600.1.p 117 KGPWTQEEDDKIIDLVRKYGPTKWSIIAKSLP-GRIGKQCRERWHNHL 163
                          79******************************.*************97 PP
3Myb_DNA-binding57.82.6e-18169212146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT+eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  Pavir.5NG582600.1.p 169 KDAWTPEEERALINAHRVYGNK-WAEIAKALP-GRTDNSIKNHWNS 212
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.71760111IPR017930Myb domain
SuperFamilySSF466891.22E-1862125IPR009057Homeodomain-like
SMARTSM007171.4E-1464113IPR001005SANT/Myb domain
PfamPF002492.9E-1565111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2267123IPR009057Homeodomain-like
CDDcd001671.93E-1368111No hitNo description
PROSITE profilePS5129432.539112167IPR017930Myb domain
SuperFamilySSF466893.34E-32114210IPR009057Homeodomain-like
SMARTSM007171.8E-18116165IPR001005SANT/Myb domain
PfamPF002492.1E-18117163IPR001005SANT/Myb domain
CDDcd001671.79E-16119163No hitNo description
Gene3DG3DSA:1.10.10.603.7E-27124171IPR009057Homeodomain-like
PROSITE profilePS5129424.239168218IPR017930Myb domain
SMARTSM007177.2E-18168216IPR001005SANT/Myb domain
PfamPF002491.4E-16169212IPR001005SANT/Myb domain
CDDcd001671.92E-14171214No hitNo description
Gene3DG3DSA:1.10.10.604.8E-24172218IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGAMAEVVQE GCVENRQPLA ASSSSVSDGS SSGGGVQAGA SPPVSSSGNS ISGLRRTSGP  60
IRRAKGGWTP EEDETLRKAV ETFNGRNWKK IAEFFHDRTE VQCLHRWQKV LNPELIKGPW  120
TQEEDDKIID LVRKYGPTKW SIIAKSLPGR IGKQCRERWH NHLNPEIRKD AWTPEEERAL  180
INAHRVYGNK WAEIAKALPG RTDNSIKNHW NSSLRKKLDV YGTNSVLAAP NLLAHDDFKD  240
QMRPVAIGSH LDLNKMPNIG SKDAPGRSHH SIMGPLLQAY NLKSVEDSSG GLLSLSIPTV  300
QASYSSLVDG SAVTLAVQGL ESGSVRDKGL EINSIHEKHE KGTEVCAIQS ESAPAQSGTK  360
ASLKNELYST LGPLCYQIPN MEEAAPINSS LHSEHHFAHQ TTRHSRDGLM SPDGYTSPSP  420
TIGEVSSPLT VDSILKTAAD SFPCTPSILR KRKRDKSTPT SDNFVTPNGM GASTNSPQSF  480
KTASFLSLGP IDDGLLTSVR SSDASPPYQI RSKRMVAIKS VEKQLDFSAD GLDTSGSEIL  540
NSPCRNSEGA NSNRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-74642185159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-74642185159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449455RKRKRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.274641e-147callus| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG582600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0653220.0BT065322.1 Zea mays full-length cDNA clone ZM_BFb0099J01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817104.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A2S3HQ480.0A0A2S3HQ48_9POAL; Uncharacterized protein
STRINGPavir.Eb03676.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-111myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]