PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG502600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 269aa    MW: 28610.6 Da    PI: 6.1752
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG502600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-11144192452
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                           kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  ++  l
  Pavir.5NG502600.1.p 144 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFL 192
                          5999**********************************88887666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-14141205IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.795143195IPR004827Basic-leucine zipper domain
PfamPF001707.0E-10145191IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.6E-12145199No hitNo description
SuperFamilySSF579596.47E-12145199No hitNo description
CDDcd147031.96E-23146197No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAQLPPRIPA AVHHWPEGGH HGAAAWADDF AEFAASRRGA QRRSLSDSVA FVEVAPADGG  60
AGEFDRLDDD QLMSMFPDEA GGGSSSAPGS ENGGSSDSDG DKRGGGAPAG GATNGCDDER  120
NEAADAQAPA TGQAAASTEL IRDPKRVKRI LANRQSAQRS RVRKLQYISE LERSVTTLQN  180
EVSVLSPRVA FLDQQRTILT VGNSHLKQRI AALAQDKIFK DAHQEALRKE IERLRQVYEQ  240
QNLKMSAGAG ASDHGPPPPV RAEKELMS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG502600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0391361e-153BT039136.1 Zea mays full-length cDNA clone ZM_BFb0374H13 mRNA, complete cds.
GenBankBT0872851e-153BT087285.1 Zea mays full-length cDNA clone ZM_BFb0029G15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969997.11e-169basic leucine zipper 6
SwissprotQ5JMK61e-116BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLK3XKX31e-168K3XKX3_SETIT; Uncharacterized protein
STRINGPavir.Eb03400.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.15e-56bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]