PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG465400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 348aa    MW: 36690.6 Da    PI: 5.9655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG465400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.22.2e-25161455127
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatg 87 
                          f+ hPtd elv+ yL++ +e+ +  +  +i+  d+y ++P dL +      ++ +e+ wyfF++ ++k+ +gkrk r  at +g W++  
  Pavir.5NG465400.1.p  16 FQSHPTDLELVNSYLRPFLETGEAAA--FIHVGDVYAADPADLTRqfapaVAQDGERAWYFFTPLRHKSVRGKRKARtvATGEGCWHNEA 103
                          7779*****************99666..79999**********84467755566888********************76688******** PP

                  NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          k+k+v+++  +++++g ++++ f +++  + ++t W+m e r
  Pavir.5NG465400.1.p 104 KSKPVYTAihGKRQIGYRQSFSFVNKEGGSRVRTGWLMMELR 145
                          ******99989999**********9999999********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.79412174IPR003441NAC domain
SuperFamilySSF1019414.32E-3114174IPR003441NAC domain
PfamPF023652.9E-1515145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVRTPSAASK PPCAAFQSHP TDLELVNSYL RPFLETGEAA AFIHVGDVYA ADPADLTRQF  60
APAVAQDGER AWYFFTPLRH KSVRGKRKAR TVATGEGCWH NEAKSKPVYT AIHGKRQIGY  120
RQSFSFVNKE GGSRVRTGWL MMELRILKDD AGQGARAEEE NALGNIVLCK VYRSPRNPEP  180
SGGVPAPALK EEEAADGDGE SSAATADDVD DDDSSDAPGP TKKSDEPESS EATVAAPPGR  240
EEKAAGDEYS AEASAASPAR KRKAPDDEGS GAAAAPRRAS PGARAPPAAE IQCPHCGTHL  300
AVTLKVSESK SETEIAKGEP GPGASDAAPR GEARGAAEKK VRFIQFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-131617219166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG465400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817187.10.0protein ATAF2-like
TrEMBLA0A3L6SNQ30.0A0A3L6SNQ3_PANMI; Protein ATAF2-like
STRINGPavir.J36802.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-18NAC domain containing protein 50