PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG465300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 29848.5 Da PI: 6.16 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.2 | 1.5e-10 | 10 | 137 | 5 | 127 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +r P +el++ +L+++v + ++ e+i+e+++y + P +L + ++++e+ wyfF++ + k + k+ ++ + W +d Pavir.5NG465300.1.p 10 LRLAPLYSELIDSFLRPRVVSGENVG-EFIHEAGVYAAGPDQLTgQflpVTAGDEEAWYFFTTLKLKGDQ---KST-ASIAPWTPGREDG 94 6788999***********99999666.89**************84367555557779*****99887543...332.3345699888877 PP NAM 91 evlsk...kgelvglkktLvfy...kgrapkgektdWvmheyr 127 + + g ++ ++f + + ++++t+W m e r Pavir.5NG465300.1.p 95 TSWGDripPKPRLGQRQNFAFVwkeDDKLVRSVRTRWSMVELR 137 7766445456669********965445667889******9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.032 | 6 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.2E-14 | 10 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-6 | 11 | 137 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 6.831 | 245 | 280 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
LPAQGAACAL RLAPLYSELI DSFLRPRVVS GENVGEFIHE AGVYAAGPDQ LTGQFLPVTA 60 GDEEAWYFFT TLKLKGDQKS TASIAPWTPG REDGTSWGDR IPPKPRLGQR QNFAFVWKED 120 DKLVRSVRTR WSMVELRRDS SDLLALCKVY RGVSDPKAKA DDGSHVAAMA GAPGRKEAED 180 EASAAAGVAA PGREEDDEID ADTAAGSTGR QKKAVGKSAG AAMTGKLCDG WRAPLDAAEK 240 AKKSPPAPFA SHPSDAALIN SYLRPWVVSG EKVGEFIHAG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG465300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972087.1 | 3e-50 | NAC domain-containing protein 45-like | ||||
TrEMBL | A0A3L6QXF6 | 1e-95 | A0A3L6QXF6_PANMI; NAC domain-containing protein 45-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22321 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 6e-06 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG465300.1.p |