PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG430300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 381aa    MW: 40024.6 Da    PI: 6.4164
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG430300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.92.6e-25491785127
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatg 87 
                          f+ hPtd elv+ yL++ +e+ +  +  +i+  d+y ++P dL +      ++ +e+ wyfF++ ++k+ +gkrk r  at +g W++  
  Pavir.5NG430300.1.p  49 FQSHPTDLELVNSYLRPFLETGEAAA--FIHVGDVYAADPADLTRqfapaVAQDGERAWYFFTPLRHKSVRGKRKARtvATGEGCWHNEA 136
                          7779*****************99666..79999**********84467755566888********************76688******** PP

                  NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          k+k+v+++  +++++g ++++ f +++  + ++t W+m e r
  Pavir.5NG430300.1.p 137 KSKPVYTAihGKRQIGYRQSFSFVNKEGGSRVRTGWLMMELR 178
                          ******99989999**********9999999********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.79445207IPR003441NAC domain
SuperFamilySSF1019414.32E-3147207IPR003441NAC domain
PfamPF023653.5E-1548178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MASQPVPIPT RIPPPPSLPP SPSPILPRPA ATAMVRTPSA ASKPPCAAFQ SHPTDLELVN  60
SYLRPFLETG EAAAFIHVGD VYAADPADLT RQFAPAVAQD GERAWYFFTP LRHKSVRGKR  120
KARTVATGEG CWHNEAKSKP VYTAIHGKRQ IGYRQSFSFV NKEGGSRVRT GWLMMELRIL  180
KDDAGQGARA EEENALGNIV LCKVYRSPRN PEPSGGVPAP ALKEEEAADG DGESSAATAD  240
DVDDDDSSDA PGPTKKSDEP ESSEATVAAP PGREEKAAGD EYSAEASAAS PARKRKAPDD  300
EGSGAAAAPR RASPGARAPP AAEIQCPHCG THLAVTLKVS ESKSETEIAK GEPGPGASDA  360
APRGEARGAA EKKVRFIQFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-124920519166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG430300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817187.10.0protein ATAF2-like
TrEMBLA0A3L6SNQ30.0A0A3L6SNQ3_PANMI; Protein ATAF2-like
STRINGPavir.J36802.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.27e-19NAC domain containing protein 50