PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG430200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 281aa    MW: 29848.5 Da    PI: 6.16
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG430200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.21.5e-10101375127
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +r  P  +el++ +L+++v + ++   e+i+e+++y + P +L  +    ++++e+ wyfF++ + k  +   k+  ++ + W    +d 
  Pavir.5NG430200.1.p  10 LRLAPLYSELIDSFLRPRVVSGENVG-EFIHEAGVYAAGPDQLTgQflpVTAGDEEAWYFFTTLKLKGDQ---KST-ASIAPWTPGREDG 94 
                          6788999***********99999666.89**************84367555557779*****99887543...332.3345699888877 PP

                  NAM  91 evlsk...kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                          +        +   g ++ ++f    + +  ++++t+W m e r
  Pavir.5NG430200.1.p  95 TSWGDripPKPRLGQRQNFAFVwkeDDKLVRSVRTRWSMVELR 137
                          7766445456669********965445667889******9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.0326152IPR003441NAC domain
SuperFamilySSF1019411.2E-1410151IPR003441NAC domain
PfamPF023655.8E-611137IPR003441NAC domain
PROSITE profilePS510056.831245280IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
LPAQGAACAL RLAPLYSELI DSFLRPRVVS GENVGEFIHE AGVYAAGPDQ LTGQFLPVTA  60
GDEEAWYFFT TLKLKGDQKS TASIAPWTPG REDGTSWGDR IPPKPRLGQR QNFAFVWKED  120
DKLVRSVRTR WSMVELRRDS SDLLALCKVY RGVSDPKAKA DDGSHVAAMA GAPGRKEAED  180
EASAAAGVAA PGREEDDEID ADTAAGSTGR QKKAVGKSAG AAMTGKLCDG WRAPLDAAEK  240
AKKSPPAPFA SHPSDAALIN SYLRPWVVSG EKVGEFIHAG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG430200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972087.13e-50NAC domain-containing protein 45-like
TrEMBLA0A3L6QXF61e-95A0A3L6QXF6_PANMI; NAC domain-containing protein 45-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2232157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.16e-06NAC domain containing protein 86