PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG401400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 24254.6 Da PI: 8.7474 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.1 | 4e-22 | 18 | 65 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + + Pavir.5NG401400.1.p 18 RIESDEARQVCFSKRRAGLFKKASELSILCGADVAAVVFSPAGKAFSF 65 8******************************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.83E-29 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.717 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.7E-35 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.11E-41 | 10 | 81 | No hit | No description |
PRINTS | PR00404 | 3.1E-20 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-26 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-20 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-20 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAPPRRPSMG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCGAD VAAVVFSPAG 60 KAFSFGHPSV ESILDRFLDT SPEAGAGLSS AGDRAVSELN RQYGELRAQL DAEKVRQERA 120 DETIRKERAA RSQAMAWLYA DLGAMGHDDL VAFWGALIGV QAAVAASADQ LLRDALLVGR 180 RGRPQPPQLA GGVAFDVAAF GVGMQPPPGL AGVDLNGLGG QATILGPSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-16 | 9 | 82 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 5e-16 | 9 | 82 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 5e-16 | 9 | 82 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 5e-16 | 9 | 82 | 1 | 74 | MEF2 CHIMERA |
6bz1_A | 4e-16 | 9 | 82 | 1 | 74 | MEF2 CHIMERA |
6bz1_B | 4e-16 | 9 | 82 | 1 | 74 | MEF2 CHIMERA |
6bz1_C | 4e-16 | 9 | 82 | 1 | 74 | MEF2 CHIMERA |
6bz1_D | 4e-16 | 9 | 82 | 1 | 74 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG401400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962654 | 1e-128 | EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806827.1 | 1e-146 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2T7EG15 | 1e-146 | A0A2T7EG15_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J11717.1.p | 1e-162 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-34 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG401400.1.p |