PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG386400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 354aa    MW: 37889.5 Da    PI: 4.9979
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG386400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26058.22.4e-18235336197
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll.....kalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C aCk+++rkC++ C++ap+fpa+++ ++ +v+k+  ++n+ +l+     +++++ +  d m+sl+ eAea  r+ ++G++  +  l  
  Pavir.5NG386400.1.p 235 RCGACKFHQRKCTATCPYAPHFPADKMIQYTIVKKVLDMNNINRLMvfygdNKVSKAQVADCMRSLIEEAEAYNRESINGSIPNLVMLLL 324
                          6*******************************************9944444456778889****************************99 PP

               DUF260  86 qleqlkaelall 97 
                          +l+ +++ela++
  Pavir.5NG386400.1.p 325 KLKGAREELASV 336
                          999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.301234340IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-19235335IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAPRTSSESS PTTDGSASAA GSASSPTCSA SSAAWSVPSS TWKTTSTSSS AVNWWAALAP  60
VMEDLAVHYC STEWWGQLVF VVATVSSALA TPALHLAAPA PAAATEGVVY EVVAEPQEPL  120
EQAQQAERRE DPAQGPVHHS TEQQPEEGAR GVWQLLKVVE EGCSDDDDTP AEGTQADPVH  180
GALSLVCSFL GKKNGGGAAR TRSRENFAAF LQWMLQESQV APANPSTEVS IRRSRCGACK  240
FHQRKCTATC PYAPHFPADK MIQYTIVKKV LDMNNINRLM VFYGDNKVSK AQVADCMRSL  300
IEEAEAYNRE SINGSIPNLV MLLLKLKGAR EELASVLRPK EDGPIDKEPA SEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG386400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Eb02853.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-16ASYMMETRIC LEAVES 2-like 1