PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG325800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 357aa MW: 37641.3 Da PI: 6.9524

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG325800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.2	1.5e-37	73	127	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ Pavir.5NG325800.1.p 73 PSCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRR 127 58**************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	69	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	73	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-32	74	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MKLSSPASRL AESSEILLLP PHRQQRRGGI VVARMLPSHC DDGSGALPYA AAGRRAAALL 60 DHRRYRPNVE VAPSCPRCDS PNTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNVPVGG 120 GCRKSRRGKP VRAGPVAGAV APGSAGAAAA AFAHRSSFHG TLRPDLLLEG MVGSPAGGLC 180 QPMDAADKPA AVQGSPIDLA LLYAKFLNHQ PAAVEQCAAI LPESLDTLSG SSSDTNPNVP 240 PPDHHPFRRA QDEFGELSAP ASADPRAAAQ QCPDARTEVL GELSFSVEQS CFDSLGLPTD 300 DGDLILPSTW HPEAKYEPFD PLPEDAMSLQ GGSSGGDDVW SSALACQGLE AALCRP*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MKLSSPASRL AESSEILLLP PHRQQRRGGI VVARMLPSHC DDGSGALPYA AAGRRAAALL  60
DHRRYRPNVE VAPSCPRCDS PNTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNVPVGG  120
GCRKSRRGKP VRAGPVAGAV APGSAGAAAA AFAHRSSFHG TLRPDLLLEG MVGSPAGGLC  180
QPMDAADKPA AVQGSPIDLA LLYAKFLNHQ PAAVEQCAAI LPESLDTLSG SSSDTNPNVP  240
PPDHHPFRRA QDEFGELSAP ASADPRAAAQ QCPDARTEVL GELSFSVEQS CFDSLGLPTD  300
DGDLILPSTW HPEAKYEPFD PLPEDAMSLQ GGSSGGDDVW SSALACQGLE AALCRP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG325800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087262	1e-109	BT087262.1 Zea mays full-length cDNA clone ZM_BFb0021J09 mRNA, complete cds.
GenBank	JX428477	1e-109	JX428477.1 Zea mays subsp. mays clone pUT3073 DOF20 C2C2-DOF type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808971.1	0.0	uncharacterized protein LOC112887095
TrEMBL	A0A3L6SWF4	0.0	A0A3L6SWF4_PANMI; Dof zinc finger protein DOF1.8-like
STRING	Pavir.J00767.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	6e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.5NG325800.1.p