PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG311800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 237aa MW: 25640.5 Da PI: 7.6273 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.5 | 6.2e-14 | 8 | 46 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 + +CnCkk+ Clk+YC+Cf+ + +Cs+ C+C++C N+e+ Pavir.5NG311800.1.p 8 RPSCNCKKTTCLKRYCQCFQGHFFCSHACNCKGCWNSEH 46 568*********************************986 PP | |||||||
2 | TCR | 45.2 | 1.9e-14 | 70 | 107 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 + kgC+C+ks C+k+YCeCf++++ C+ +CkC++C+N+ Pavir.5NG311800.1.p 70 HGKGCTCNKSGCKKNYCECFKKQVACTTRCKCQGCENS 107 579**********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 9.2E-9 | 5 | 47 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 25.635 | 7 | 109 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.1E-10 | 10 | 44 | IPR005172 | CRC domain |
SMART | SM01114 | 3.2E-9 | 69 | 110 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-10 | 72 | 107 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDEDKEQRPS CNCKKTTCLK RYCQCFQGHF FCSHACNCKG CWNSEHRRTF TKPGAPQSKD 60 SALTAEQRVH GKGCTCNKSG CKKNYCECFK KQVACTTRCK CQGCENSYGS GGKGLQENSD 120 PGRPSGKPNG EPGGGDGSPG GSGESAVVID EELLRPTEAG VAENVAAIDD PSDSGPCIHG 180 GIYIYQNSQP QRNQGPVQAI LTHEKPTTTR RIPKQVEIDE AAEIQNIGNR YDCTWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-11 | 8 | 106 | 11 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-11 | 8 | 106 | 11 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG311800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814306.1 | 5e-99 | protein lin-54-like | ||||
TrEMBL | A0A3L6SGH0 | 1e-110 | A0A3L6SGH0_PANMI; Protein tesmin/TSO1-like CXC 3 | ||||
STRING | Pavir.Eb02050.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 2e-20 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG311800.1.p |