PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG301800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 287aa    MW: 31739.6 Da    PI: 7.7197
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG301800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.86.4e-17133212190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +f+n Y+ e+GF +r  +s+k+ ++g +t+++ vCs+eg++++++ +         + rt Ck ++++ +++d+ w+++++++ HnH+l+
  Pavir.5NG301800.1.p 133 DFFNLYSWEIGFGTRYGRSNKN-NKGYTTRQDIVCSCEGSPRTKNCA---------SIRTRCKVMIRLLRTSDHGWYISRVSTSHNHKLS 212
                          6********************9.7788*************9987665.........9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-13133212IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDCDASSAIR HCLTEVSPEQ EGIMNIDLEL GVAEMIRDKF VGGDSGQIEG NGQEGGDSGA  60
EEAELALEAG NVITERRIGW TRKSAREGPS VRIAVNEESA ITRALSQAAR NQGSPIFQPL  120
EGTLFSSSEE ARDFFNLYSW EIGFGTRYGR SNKNNKGYTT RQDIVCSCEG SPRTKNCASI  180
RTRCKVMIRL LRTSDHGWYI SRVSTSHNHK LSEGYAEKKQ WNSHSMIDPS TKYFIKKLRD  240
NNVSIGRVCS IIGVTDSSAM NPVRKETIRS LCAKVARENM ADDIGKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG301800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.12e-79protein FAR1-RELATED SEQUENCE 11
RefseqXP_025822596.11e-83protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_025822597.11e-83protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1B6Q0S64e-78A0A1B6Q0S6_SORBI; Uncharacterized protein
TrEMBLA0A1W0VV915e-78A0A1W0VV91_SORBI; Uncharacterized protein
STRINGPavir.Eb02083.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.15e-11FAR1-related sequence 7