PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG278700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 354aa    MW: 37991.9 Da    PI: 8.2759
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG278700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.61.9e-26189247259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Pavir.5NG278700.1.p 189 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 247
                          699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26187249IPR003657WRKY domain
SuperFamilySSF1182903.66E-24188249IPR003657WRKY domain
SMARTSM007743.2E-31188248IPR003657WRKY domain
PROSITE profilePS5081129.126189249IPR003657WRKY domain
PfamPF031062.2E-22190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAALSPPWCN RPASTAEISG RNLAGFLSRG HERATPPPPA AAKGAARLYD LEYLDLDRKP  60
FLLPATPPPL GARAAGDDAC EREVMISFPA AAAAASTSGA QQRALPPGRK AGARTPRPKR  120
RYDPTTETCL RAPSLDADRD RSARFRSKLK FISALFSFSP PRLWFGSKKS QLKKVVREMP  180
VADGGASSSD PWAWRKYGQK PIKGSPYPRG YYKCSSMKGC MARKLVERSP AKPGVLIVTY  240
MAEHCHPVPT QLNALAGTTR HKSSPKGGHD HEQGPPPAGA AAEDAARCDA DSNDKSALEF  300
GAEDMTAVDD ESELWPAGMD LDELLAPVDD DFDFEHAIDE GDGDGVLGRR LSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-18169250280Disease resistance protein RRS1
5w3x_D9e-18169250280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG278700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769241e-106AY676924.1 Oryza sativa (indica cultivar-group) transcription factor WRKY03 (WRKY03) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815405.11e-135probable WRKY transcription factor 27
TrEMBLA0A3L6R1B61e-137A0A3L6R1B6_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Eb01119.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-34WRKY DNA-binding protein 27