PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG269400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 28067.3 Da PI: 8.6939 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv + ++G g+W++ ar g++R +k+c++rw++yl Pavir.5NG269400.1.p 15 KGPWTLEEDLILVGHISEHGEGSWDKLARAAGLNRNGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 72 | 111 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T+ Ed + ++++ lG++ W++I+++++ gRt++++k++w++ Pavir.5NG269400.1.p 72 TPAEDAAIRELHAALGNR-WSKISKHLP-GRTDNEIKNYWRT 111 999***************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.956 | 10 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-20 | 10 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.72E-30 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.462 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.59E-12 | 72 | 111 | No hit | No description |
Pfam | PF00249 | 3.6E-13 | 72 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MTTSGRGGDQ PAVRKGPWTL EEDLILVGHI SEHGEGSWDK LARAAGLNRN GKSCRLRWLN 60 YLRPGVRHGG ITPAEDAAIR ELHAALGNRW SKISKHLPGR TDNEIKNYWR TRIQKKQAAA 120 KTTPRQPTPA VSEGSSSAAG NYYWCGTKAD PDRQAAYYCQ KAAMAAASTA AAAVSGEGAG 180 ASTALTSLDS PTARESECRI QQSSYCPDYS ELMSSAAGHA ETAVGVDALT PPYLFSSLFM 240 TPAFWSAVEN FWETKPVASA F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 11 | 116 | 23 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG269400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728193 | 1e-121 | KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815397.1 | 1e-139 | transcription factor MYB57-like | ||||
TrEMBL | A0A2T7DJA7 | 1e-139 | A0A2T7DJA7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01665.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13240 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-56 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG269400.1.p |