PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG218200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 402aa    MW: 42236 Da    PI: 4.9861
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG218200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.37.3e-2389141155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W++eLH+ F++a + L G+  A+Pk+il lm+v+g+t+e+v+SHLQkYRl
  Pavir.5NG218200.1.p  89 KPRVVWSEELHDIFLKAYSIL-GE-DAVPKKILALMNVDGITRENVASHLQKYRL 141
                          79*******************.55.5****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.08586144IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2387145IPR009057Homeodomain-like
SuperFamilySSF466893.05E-1688145IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-2289141IPR006447Myb domain, plants
PfamPF002492.9E-791140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MTPPQASAMA PEATGDDGSL GSAMEPAAQS KPRKRKKSRP PRPPPPSSME GKPTKWKKVA  60
SSSTAAGPAT PSPPSGGDSS GDGQQQRGKP RVVWSEELHD IFLKAYSILG EDAVPKKILA  120
LMNVDGITRE NVASHLQKYR LSLKQEEKRI PDNEGGDERP TLHAEAFSSQ TPLPTTPPQA  180
QAQAQEPAPD PSSLHAHTLP PQPEAPFAAL RASSQLQVGQ HHGQQLLLQT PPADCFGVNT  240
TATDWLLGPG GVPMAQPIQQ QRVAPPPEAT VAARRELFKK QEEAARQAEM ASMMRYEEAE  300
EIAMAAQLGT ATEGEDGQGQ VAAEMGAKAG DGQGLPAEPE AAEMAAAGPE EGQGRGGEPA  360
GAAAPAGSGS PPGSSSIHER YWKIDDAEVS WDFGFLWYKT G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-1989145562ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG218200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819305.11e-133probable transcription factor GLK2
TrEMBLA0A2T7DN521e-142A0A2T7DN52_9POAL; Uncharacterized protein
STRINGPavir.Eb01200.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2096956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.12e-19response regulator 18