PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG169900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 528aa MW: 57773.5 Da PI: 5.9527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.3 | 6.3e-49 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGf F P+d el+ +yLk+k++g+k+e + i+evdiyk+ePwdLp+ ++ e+++w+fFs+rd+ky+tg+r+nrat +gyWk+tgk Pavir.5NG169900.1.p 9 LPPGFGFYPSDTELIGHYLKRKIHGQKIEH-DLIPEVDIYKHEPWDLPAkcNFPIEDNKWHFFSSRDRKYPTGSRSNRATVAGYWKSTGK 97 79**************************99.99***************6245555999******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ ++ ++++ g+kktLvf+ gr p+g++t+W+mhey + Pavir.5NG169900.1.p 98 DRGIKL-NKRTLGTKKTLVFHAGRPPSGRRTEWIMHEYYI 136 ******.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-56 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.525 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-24 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MEALRNMKLP PGFGFYPSDT ELIGHYLKRK IHGQKIEHDL IPEVDIYKHE PWDLPAKCNF 60 PIEDNKWHFF SSRDRKYPTG SRSNRATVAG YWKSTGKDRG IKLNKRTLGT KKTLVFHAGR 120 PPSGRRTEWI MHEYYIDEKE CQVSPDMKDA FVLCRVTKRS DWALDNDNEA GDRNPHHQQQ 180 IDASTSVVKP EHAATSVVNP EDAATSVLNP EDAAMSVVKP EDAAASVICA GESNDVAMAS 240 ITADKESPNG SNELDEWLEE LLDPSPSFNP LPDTGCAILP LSEQYAESSN TGCVVPKTGP 300 DHASPIKDGT DATDYLFTDD LPDDLYNMVF PGIDDFSNNM FLEPAGLLSE ASATNQAYHM 360 MGLPNNFGDG TLKDELQLDQ ENNKSSLSNG NIDNGVTVRR RSASASAANI SPAPGRIKLQ 420 LGIKKMVTSN SESINQTMKF ADNSGRRLDL MTSVEHQKKH ANDATSVKQS DAAKPGEGHS 480 NQGYLRGAKN AFRCSSAGLK AYILFAIFMV GVAAAVALHY HRSGASL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-46 | 2 | 162 | 8 | 172 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6415 | 0.0 | callus| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG169900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955447 | 1e-173 | EU955447.1 Zea mays clone 1532551 TIP mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818496.1 | 0.0 | NAC domain-containing protein 74-like | ||||
Swissprot | Q7GCL7 | 1e-169 | NAC74_ORYSJ; NAC domain-containing protein 74 | ||||
TrEMBL | A0A3L6QW20 | 0.0 | A0A3L6QW20_PANMI; NAC domain-containing protein 74-like | ||||
STRING | Pavir.Eb01057.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7560 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 8e-65 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG169900.1.p |
Publications ? help Back to Top | |||
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