PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG153600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 370aa    MW: 40060.2 Da    PI: 7.9784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG153600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.5e-50291681128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL+k++++ ++++  vi+evdiyk++PwdLp+++  +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk
  Pavir.5NG153600.1.p  29 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPAMAIFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDK 117
                          79***************************9.89***************76667899********************************** PP

                  NAM  91 evlsk.............kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                          +++ +             +     +g+kk Lvfykgr pkg kt+W+mheyrl
  Pavir.5NG153600.1.p 118 PITLSsgagaaaapdsseS--RamIGVKKALVFYKGRPPKGLKTSWIMHEYRL 168
                          ***9876666555554444..066***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-6125201IPR003441NAC domain
PROSITE profilePS5100558.75629201IPR003441NAC domain
PfamPF023652.0E-2630168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAIDLGLAPA PASSSSGGRR GMPSPCTALP PGFRFHPTDE ELILHYLRKR AAAAPCPAPV  60
IAEVDIYKFD PWDLPAMAIF GEAEWYFFSP RDRKYPNGVR PNRAAGSGYW KATGTDKPIT  120
LSSGAGAAAA PDSSESRAMI GVKKALVFYK GRPPKGLKTS WIMHEYRLAE ALAAANTYRP  180
MRFKNSSMRL DDWVLCRIYK KTTPQLYCGS PPHDEPSMDG GLDLGRRQQD GSSASAGDIV  240
ATYDAPSGGL PRPASISDYL VDYNYSPVSE LLESMPAPET AAQLGIMDPG RLFYAANHSE  300
AAASSSAAQQ QMSSHKRRFM EDYSNSDLNM LHASSSKRVM SDRASMAANH AFSSVFEPGQ  360
TSLPDRMTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-692320311167NO APICAL MERISTEM PROTEIN
1ut4_B7e-692320311167NO APICAL MERISTEM PROTEIN
1ut7_A7e-692320311167NO APICAL MERISTEM PROTEIN
1ut7_B7e-692320311167NO APICAL MERISTEM PROTEIN
3swm_A1e-682320314170NAC domain-containing protein 19
3swm_B1e-682320314170NAC domain-containing protein 19
3swm_C1e-682320314170NAC domain-containing protein 19
3swm_D1e-682320314170NAC domain-containing protein 19
3swp_A1e-682320314170NAC domain-containing protein 19
3swp_B1e-682320314170NAC domain-containing protein 19
3swp_C1e-682320314170NAC domain-containing protein 19
3swp_D1e-682320314170NAC domain-containing protein 19
4dul_A7e-692320311167NAC domain-containing protein 19
4dul_B7e-692320311167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG153600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554201e-171EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816084.10.0NAC transcription factor 29-like
TrEMBLA0A2S3HX030.0A0A2S3HX03_9POAL; Uncharacterized protein
STRINGPavir.Ea00837.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-76NAC domain containing protein 47