PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5NG079300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 27837.9 Da PI: 5.4466 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.9e-19 | 79 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r +lg+f ta eAa a+++a+k+++g Pavir.5NG079300.1.p 79 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTAVEAAHAYDEAAKAMYG 128 59****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-13 | 78 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.641 | 79 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 79 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-34 | 79 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 80 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-9 | 80 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.26E-29 | 80 | 138 | No hit | No description |
PRINTS | PR00367 | 4.0E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MDLGHGGQGG EGDSSGGQVR KKRARRKSTG PDSIAETIKW WKEQNQKLQD ESGSRKAPAK 60 GSKKGCMAGK GGPENGNCAY RGVRQRTWGK WVAEIREPNR GRRLWLGSFP TAVEAAHAYD 120 EAAKAMYGAK ARVNFSENSP DANSGCTSAL SLLASSVPAV ALHGFNEKDE VESVETEVHD 180 VKAQVNNDLG SIHVECTSVE VLQSGESVLQ KEGSVSYDYF NVEEVVEMII IELNADKKIE 240 VHEECLGGDD GFSLFAY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-15 | 80 | 135 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.20564 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5NG079300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ132744 | 0.0 | HQ132744.1 Setaria italica dehydration responsive element-binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816059.1 | 0.0 | dehydration-responsive element-binding protein 2A-like | ||||
Swissprot | A2WL19 | 1e-122 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A3L6QX70 | 0.0 | A0A3L6QX70_PANMI; Dehydration-responsive element-binding protein 2A isoform X1 | ||||
STRING | Pavir.J37967.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-35 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5NG079300.1.p |