PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG041600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 312aa    MW: 33712.5 Da    PI: 6.5116
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG041600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.7e-11178222549
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                          kr +r   NR +A+rsR RK+++i eLe+ v  L++e +aL  ++
  Pavir.5NG041600.1.p 178 KRVKRILANRQSAQRSRVRKLQYISELERSVTLLQTEVSALSPRV 222
                          8999*********************************99998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-13174238IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.668176232IPR004827Basic-leucine zipper domain
PfamPF001706.4E-10178228IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-13178232No hitNo description
SuperFamilySSF579591.55E-11178232No hitNo description
CDDcd147031.44E-23179229No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAQLPPKIPA MAPAWPEFGG GHHHHAHHHQ QRSPSVGTFL AAPMPPQQPT WVEEFLDFTA  60
AKRGAHRRTV SDSVAFLEPG PDDGNAGDGA HDFDRLDDDQ LLSMFSDDLP PPPPPPQQQQ  120
AAPAPAPVAS SSSPSDHNSI NDEKTDRGET EEAQSKCHGD APAAPGQPAS AAAAVDPKRV  180
KRILANRQSA QRSRVRKLQY ISELERSVTL LQTEVSALSP RVAFLDHQRS LLTLGNSHLK  240
QRIAALAQDK IFKDAHQEAL KKEIERLRQI YLQQSLKNAE SSPTPDAAPI RSDKDLIASE  300
GTAAPEPCPP S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.226421e-89root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG041600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817786.11e-166basic leucine zipper 2-like
SwissprotQ5QNI51e-105BZP02_ORYSJ; Basic leucine zipper 2
TrEMBLA0A2S3HYX31e-164A0A2S3HYX3_9POAL; Uncharacterized protein
TrEMBLA0A2T7DSS51e-164A0A2T7DSS5_9POAL; Uncharacterized protein
STRINGPavir.J05339.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.13e-85bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]