PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG025900.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 1133aa MW: 125928 Da PI: 6.784 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.2 | 6.4e-23 | 95 | 196 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Pavir.5NG025900.5.p 95 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDSTWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV 182 99*****************************954.4444.48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++++l+++++r+ Pavir.5NG025900.5.p 183 --RDEKQQLLLGIRRA 196 ..5688889****997 PP | |||||||
2 | Auxin_resp | 118.3 | 6.2e-39 | 221 | 304 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ Pavir.5NG025900.5.p 221 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 304 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-43 | 84 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-41 | 87 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.65E-19 | 94 | 186 | No hit | No description |
SMART | SM01019 | 1.2E-22 | 95 | 197 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-21 | 95 | 196 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.026 | 95 | 197 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-33 | 221 | 304 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.4E-10 | 964 | 1050 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.975 | 965 | 1049 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.96E-7 | 978 | 1044 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1133 aa Download sequence Send to blast |
MGHHMFGCGK DSVSASKYCE VAASMQKDVD GHVPSYPNLP SKLICLLHNV TLHADPETDE 60 VYAQMTLQPV TSYGKEALQL SELALKQPRP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI 120 FPPLDFSMQP PAQEIQARDL HDSTWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVI 180 FVRDEKQQLL LGIRRANRQP TNISSSVLSS DSMHIGILAA AAHAAANNSP FTIFYNPRAS 240 PTEFVVPFAK YQKALYGNQI SLGMRFRMMF ETEELGTRRY MGTITGISDL DPVRWKNSQW 300 RNLQVGWDES AAGERRNRVS IWEIEPVAAP FFICPPPFFG SKRPRQLDDE SSEMENLLKR 360 AMPWLGEEIC IKDPQTQNTI MPGLSLVQWM NMNMQQNSSF ANTAMHSEYL RSLSNPSMQN 420 LGAADLSRQL CLQNQILQQN SIQFSSPKLP QQMQPVNELS KATLPLNQLG VSTKQQEQTQ 480 DPSNLQRQQQ SMNQLNPLSQ SQTNLVQAQV LVQNQMQQQQ PPSMTQNQQS STSQPQLLPH 540 QQQQHQQQKL LHQQQQLLLQ QQQLQQQQQN QQQLNKMAAQ VPNLAAQQLQ LSDQQLQLQL 600 LQKLQQQQQQ SLLSQPAVTL AQLPLIQEQQ KLILDMQQQL SNSQSLSQQQ TMPQQSTKVP 660 SQTPPPPHMQ QEPQQKVPQK HVGFPDTSHA AIPPPSTSVN AISVAGSPLM ANGTTHSVLT 720 EEIPSCSTSP STANGNHLVQ PILGRNQQCG MINTEKVPQS TAPMSIPSSL DAVTAAPRAT 780 KELPKLNSNV KQSVMASKLP NPGPVPQNLV NSAPPTDYLE TASSATSVWL SQTDGLLHQG 840 FPMSNFNQQQ LFKDVPPETD IQGADPSNNA LFGINSDGQL GFPMGADGFL SNGIDTSKYQ 900 NHISTDIDGN YRIPKDGQQE ISSSMVSQSF GASDMAFNSI DSAMNDGGFL NRTSWPPAPP 960 LKRMRTFTKV YKRGAVGRSI DISQYSGYDE LKHALARMFS IEGQLEERQR IGWKLVYKDH 1020 EDDILLLGDD PWEEFVNCVR CIRILSPQEV QQMSLDGDLG NNILPNQACS SSDGGNAWRA 1080 RCDQNSGNLL QIVKPSASRS TILPENDQQN CRSQPSTWVS DAGCSCCCMN DW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-143 | 20 | 325 | 83 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.791 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG025900.5.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810783.1 | 0.0 | auxin response factor 19-like isoform X3 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A2T7DUH4 | 0.0 | A0A2T7DUH4_9POAL; Auxin response factor | ||||
STRING | Pavir.J00164.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG025900.5.p |