PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG025900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 1075aa MW: 119713 Da PI: 6.6615 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.3 | 5.9e-23 | 71 | 172 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Pavir.5NG025900.3.p 71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDSTWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV 158 99*****************************954.4444.48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++++l+++++r+ Pavir.5NG025900.3.p 159 --RDEKQQLLLGIRRA 172 ..5688889****997 PP | |||||||
2 | Auxin_resp | 118.4 | 5.8e-39 | 197 | 280 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ Pavir.5NG025900.3.p 197 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 280 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-43 | 60 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-41 | 63 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.37E-19 | 70 | 162 | No hit | No description |
SMART | SM01019 | 1.2E-22 | 71 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-21 | 71 | 172 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.026 | 71 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-33 | 197 | 280 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.0E-10 | 940 | 1026 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.975 | 941 | 1025 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.77E-7 | 954 | 1020 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1075 aa Download sequence Send to blast |
MQKDVDGHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG KEALQLSELA 60 LKQPRPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDST 120 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS 180 SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VVPFAKYQKA LYGNQISLGM 240 RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI 300 EPVAAPFFIC PPPFFGSKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL 360 SLVQWMNMNM QQNSSFANTA MHSEYLRSLS NPSMQNLGAA DLSRQLCLQN QILQQNSIQF 420 SSPKLPQQMQ PVNELSKATL PLNQLGVSTK QQEQTQDPSN LQRQQQSMNQ LNPLSQSQTN 480 LVQAQVLVQN QMQQQQPPSM TQNQQSSTSQ PQLLPHQQQQ HQQQKLLHQQ QQLLLQQQQL 540 QQQQQNQQQL NKMAAQVPNL AAQQLQLSDQ QLQLQLLQKL QQQQQQSLLS QPAVTLAQLP 600 LIQEQQKLIL DMQQQLSNSQ SLSQQQTMPQ QSTKVPSQTP PPPHMQQEPQ QKVPQKHVGF 660 PDTSHAAIPP PSTSVNAISV AGSPLMANGT THSVLTEEIP SCSTSPSTAN GNHLVQPILG 720 RNQQCGMINT EKVPQSTAPM SIPSSLDAVT AAPRATKELP KLNSNVKQSV MASKLPNPGP 780 VPQNLVNSAP PTDYLETASS ATSVWLSQTD GLLHQGFPMS NFNQQQLFKD VPPETDIQGA 840 DPSNNALFGI NSDGQLGFPM GADGFLSNGI DTSKYQNHIS TDIDGNYRIP KDGQQEISSS 900 MVSQSFGASD MAFNSIDSAM NDGGFLNRTS WPPAPPLKRM RTFTKVYKRG AVGRSIDISQ 960 YSGYDELKHA LARMFSIEGQ LEERQRIGWK LVYKDHEDDI LLLGDDPWEE FVNCVRCIRI 1020 LSPQEVQQMS LDGDLGNNIL PNQACSSSDG GNAWRARCDQ NSGNPSNGSY DQFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-143 | 9 | 301 | 96 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.791 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG025900.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810782.1 | 0.0 | auxin response factor 19-like isoform X2 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A2T7DUH4 | 0.0 | A0A2T7DUH4_9POAL; Auxin response factor | ||||
STRING | Pavir.J00164.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 1e-179 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG025900.3.p |