PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG025900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1149aa    MW: 127124 Da    PI: 6.6754
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG025900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.5e-23145246199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Pavir.5NG025900.2.p 145 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDSTWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV 232
                          99*****************************954.4444.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l+++++r+
  Pavir.5NG025900.2.p 233 --RDEKQQLLLGIRRA 246
                          ..5688889****997 PP
2Auxin_resp118.36.3e-39271354183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Pavir.5NG025900.2.p 271 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 354
                          79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
SuperFamilySSF1019363.79E-43134274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41137260IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-19144236No hitNo description
PROSITE profilePS5086312.026145247IPR003340B3 DNA binding domain
SMARTSM010191.2E-22145247IPR003340B3 DNA binding domain
PfamPF023627.9E-21145246IPR003340B3 DNA binding domain
PfamPF065071.1E-33271354IPR010525Auxin response factor
PfamPF023096.5E-1010141100IPR033389AUX/IAA domain
PROSITE profilePS5174527.97510151099IPR000270PB1 domain
SuperFamilySSF542771.96E-710281094No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1149 aa     Download sequence    Send to blast
MIKQQQHQQP ASSVGPQAAA VAAAAAGGCE GEKKPPAINS ELWHACAGPL VSLPPAGSLV  60
VYFPQGHSEQ VAASMQKDVD GHVPSYPNLP SKLICLLHNV TLHADPETDE VYAQMTLQPV  120
TSYGKEALQL SELALKQPRP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP  180
PAQEIQARDL HDSTWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVI FVRDEKQQLL  240
LGIRRANRQP TNISSSVLSS DSMHIGILAA AAHAAANNSP FTIFYNPRAS PTEFVVPFAK  300
YQKALYGNQI SLGMRFRMMF ETEELGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES  360
AAGERRNRVS IWEIEPVAAP FFICPPPFFG SKRPRQLDDE SSEMENLLKR AMPWLGEEIC  420
IKDPQTQNTI MPGLSLVQWM NMNMQQNSSF ANTAMHSEYL RSLSNPSMQN LGAADLSRQL  480
CLQNQILQQN SIQFSSPKLP QQMQPVNELS KATLPLNQLG VSTKQQEQTQ DPSNLQRQQQ  540
SMNQLNPLSQ SQTNLVQAQV LVQNQMQQQQ PPSMTQNQQS STSQPQLLPH QQQQHQQQKL  600
LHQQQQLLLQ QQQLQQQQQN QQQLNKMAAQ VPNLAAQQLQ LSDQQLQLQL LQKLQQQQQQ  660
SLLSQPAVTL AQLPLIQEQQ KLILDMQQQL SNSQSLSQQQ TMPQQSTKVP SQTPPPPHMQ  720
QEPQQKVPQK HVGFPDTSHA AIPPPSTSVN AISVAGSPLM ANGTTHSVLT EEIPSCSTSP  780
STANGNHLVQ PILGRNQQCG MINTEKVPQS TAPMSIPSSL DAVTAAPRAT KELPKLNSNV  840
KQSVMASKLP NPGPVPQNLV NSAPPTDYLE TASSATSVWL SQTDGLLHQG FPMSNFNQQQ  900
LFKDVPPETD IQGADPSNNA LFGINSDGQL GFPMGADGFL SNGIDTSKYQ NHISTDIDGN  960
YRIPKDGQQE ISSSMVSQSF GASDMAFNSI DSAMNDGGFL NRTSWPPAPP LKRMRTFTKV  1020
YKRGAVGRSI DISQYSGYDE LKHALARMFS IEGQLEERQR IGWKLVYKDH EDDILLLGDD  1080
PWEEFVNCVR CIRILSPQEV QQMSLDGDLG NNILPNQACS SSDGGNAWRA RCDQNSGNPS  1140
NGSYDQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1683137545388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.7910.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG025900.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810781.10.0auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2T7DUH30.0A0A2T7DUH3_9POAL; Auxin response factor
STRINGPavir.J00164.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19