PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG019300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 358aa    MW: 38243.5 Da    PI: 4.4427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG019300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-20124174155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Pavir.5NG019300.1.p 124 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRG 174
                          689*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-12124174IPR001471AP2/ERF domain
CDDcd000184.70E-28124184No hitNo description
Gene3DG3DSA:3.30.730.104.7E-29125183IPR001471AP2/ERF domain
PROSITE profilePS5103223.301125182IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21125182IPR016177DNA-binding domain
SMARTSM003803.7E-34125188IPR001471AP2/ERF domain
PRINTSPR003674.6E-10126137IPR001471AP2/ERF domain
PRINTSPR003674.6E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MWAMEDEMFV LVRRTEHVEV TSRAVEVAPA RESAAPGPTT IRVFCDDYDA TDSSGDDDDA  60
GAAAAAARRR VKRYVQEIRL ERAVKEAPPA RATAASPAPA ATARVKLVLL GRKRKADGAG  120
AAEPRFRGVR RRPWGKYAAE IRDPWRRVRV WLGTFDTAEE AAKVYDSAAI QLRGPDATTN  180
FEQVDDAALA VPAEVAERLP QPPSKNASSS ATSYDSGEES HAAAASPTSV LRSFPPSAVA  240
DDTCSKKPAP ASAAPAPLPA SRAPETDESG GVFGCPFAGE FPPLYTEFDL LADFPEPSLD  300
FLADIPEEPL SLPSFSAATA TTSESSSEPP SPARWQQVDD FFQDITDLFQ IDPLPVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20118181771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.156950.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG019300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.11e-170ethylene-responsive transcription factor CRF1
TrEMBLA0A2T7DT351e-169A0A2T7DT35_9POAL; Uncharacterized protein
STRINGPavir.Eb00092.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-28cytokinin response factor 4