PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG008500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 467aa    MW: 50289.1 Da    PI: 6.5922
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG008500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27200254156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  Pavir.5NG008500.1.p 200 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 254
                          5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.806197256IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-26198257IPR009057Homeodomain-like
SuperFamilySSF466895.2E-18199257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26200254IPR006447Myb domain, plants
PfamPF002495.8E-7203252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLEVSSLRSP SKVDHQRGFV GDHVVFPTSG SVCDDFMVDD NLLDYIDFSC DVPFFDADGD  60
ILPDLEVDPT ELLAEFSSPE TSPTEADGCR VEAKPPDDLR QAAAEEEAVT TSTTVEEKKA  120
DEIINRRMLL GNDDDKLAAA SGSGVTTTRK SVDAEGSSAV TTEEDSAGAG SDTKSSSASA  180
GGHCGKKKAA DKKSSNGKRK VKVDWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIDCLT  240
RHNIASHLQK YRSHRKHLMA REAEAATWAQ KRHHMYAPAA AGGPWVVPTL GFPPPPPPPP  300
LCRPLHVWGH PPTAGVEAAA PPPAMLPVWA RHLAPPRPWA PPVAYWHLQQ HQYNAARKWG  360
PHQAAAAAVT PAMVPRFPVP PHPHPATMYR PPMVVPPPPT TTTTKLADLQ LQLDAHPSKE  420
SIDAAIGDVL VKPWLPLPLG LKPPSMDSVM SELHKQGIPK VPPSSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-15197252257ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.160460.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG008500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185791e-100AF318579.1 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds.
GenBankBT0628381e-100BT062838.1 Zea mays full-length cDNA clone ZM_BFb0374G22 mRNA, complete cds.
GenBankEU9567921e-100EU956792.1 Zea mays clone 1574106 transcription factor ZmGLK1 mRNA, complete cds.
GenBankKJ7276891e-100KJ727689.1 Zea mays clone pUT5628 G2-like transcription factor (GLK13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818980.10.0probable transcription factor GLK2 isoform X3
SwissprotQ5NAN51e-112GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A2T8IPG40.0A0A2T8IPG4_9POAL; Uncharacterized protein
STRINGPavir.Ea00014.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.16e-59GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]