PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG005800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 539aa    MW: 59246.7 Da    PI: 7.4792
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG005800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-16200290199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v +  +l lp  f+++h  k  e++ ++lede+g+  +  +   + +++  l++GW++F+  +++k+gD+v+F+l+g+++f
  Pavir.5NG005800.2.p 200 FVKRMLQSHVVRGFWLGLPTYFCNKHLPK--EDTGIVLEDENGQDHQTLY--LGAKQG--LSAGWRGFAIKHDIKVGDVVIFQLVGSTKF 283
                          89**********************99533..4457***************..788877..9************************98888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v ++r+
  Pavir.5NG005800.2.p 284 --MVYIIRA 290
                          ..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-19194291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-22195291IPR015300DNA-binding pseudobarrel domain
CDDcd100176.91E-24198289No hitNo description
PROSITE profilePS5086312.337200291IPR003340B3 DNA binding domain
SMARTSM010192.5E-16200291IPR003340B3 DNA binding domain
PfamPF023628.0E-15200290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MLPFGGEPRG VEWEQPRVHQ SSCSCTVDSE NPVSCSFSTF TTTIVYKATP FPVGSSSSVP  60
TPTFPTLNPS IDSRAERNPL EASKVPFQEC VAEAMAMDPP LKRKRGRSPG TQSAKSKMER  120
KTALVKQRLA LLDSASSSSS SSSSAEIDKD DDFVPMVLAS KGLESEKRSL PGQNISANYG  180
SAMDRAEEVQ AKLPAEHPSF VKRMLQSHVV RGFWLGLPTY FCNKHLPKED TGIVLEDENG  240
QDHQTLYLGA KQGLSAGWRG FAIKHDIKVG DVVIFQLVGS TKFMVYIIRA NKFTTADGAI  300
SLLNLEVHKK GKLSKKGCFE DDKAEKASPV DDKVPQSDEN NAVASEAIDG LRISDSDMDF  360
GDVTSFSNFN IVVDSLVIDC KFHDHLRRRY YELCCSQKSF LHKNLLKQLN LTLVVGVIME  420
TISIAEGIRA CKAQAPSRED LMTWKKTLES LELLGMNVAF LVKRVNDLLS LPAGPSECQK  480
YKELKSERAH AGEKLKALEL MLSNVKGLLQ KMGAEMEEME SSVKRSGLTL QQLATAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG005800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818274.10.0B3 domain-containing protein Os01g0234100-like isoform X2
SwissprotQ0JP991e-175Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2T7DTF30.0A0A2T7DTF3_9POAL; Uncharacterized protein
STRINGPavir.Eb00031.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]