PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG005800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 564aa    MW: 62110.8 Da    PI: 6.1673
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG005800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-16225315199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v +  +l lp  f+++h  k  e++ ++lede+g+  +  +   + +++  l++GW++F+  +++k+gD+v+F+l+g+++f
  Pavir.5NG005800.1.p 225 FVKRMLQSHVVRGFWLGLPTYFCNKHLPK--EDTGIVLEDENGQDHQTLY--LGAKQG--LSAGWRGFAIKHDIKVGDVVIFQLVGSTKF 308
                          89**********************99533..4457***************..788877..9************************98888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v ++r+
  Pavir.5NG005800.1.p 309 --MVYIIRA 315
                          ..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-19219316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-22220316IPR015300DNA-binding pseudobarrel domain
CDDcd100175.68E-24223314No hitNo description
PfamPF023628.6E-15225315IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337225316IPR003340B3 DNA binding domain
SMARTSM010192.5E-16225316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MLPFGGEPRG VEWEQPRVHQ SSCSCTVDSE NPVSCSFSTF TTTIVYKATP FPVGSSSSVP  60
TPTFPTLNPS IDSRAERNPL EASKVPFQEC VAEAMAMDPP LKRKRGRSPG TQSAKSKMER  120
KTALVKQRLA LLDSASSSSS SSSSAEIDKD DDFVPMDDEL SIPIEIDYGD SYNEDEVIPL  180
KVLASKGLES EKRSLPGQNI SANYGSAMDR AEEVQAKLPA EHPSFVKRML QSHVVRGFWL  240
GLPTYFCNKH LPKEDTGIVL EDENGQDHQT LYLGAKQGLS AGWRGFAIKH DIKVGDVVIF  300
QLVGSTKFMV YIIRANKFTT ADGAISLLNL EVHKKGKLSK KGCFEDDKAE KASPVDDKVP  360
QSDENNAVAS EAIDGLRISD SDMDFGDVTS FSNFNIVVDS LVIDCKFHDH LRRRYYELCC  420
SQKSFLHKNL LKQLNLTLVV GVIMETISIA EGIRACKAQA PSREDLMTWK KTLESLELLG  480
MNVAFLVKRV NDLLSLPAGP SECQKYKELK SERAHAGEKL KALELMLSNV KGLLQKMGAE  540
MEEMESSVKR SGLTLQQLAT APW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG005800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818273.10.0B3 domain-containing protein Os01g0234100-like isoform X1
SwissprotQ0JP991e-176Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2S3HZ840.0A0A2S3HZ84_9POAL; Uncharacterized protein
STRINGPavir.Eb00031.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]