PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG726700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 423aa MW: 45985 Da PI: 8.6196 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.6e-09 | 68 | 93 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C++G C+F+H+p Pavir.5KG726700.1.p 68 GEPDCTYYLRTGLCRFGMCCRFNHPP 93 789*********************97 PP | |||||||
2 | zf-CCCH | 39.4 | 9.8e-13 | 113 | 138 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Pavir.5KG726700.1.p 113 GQPECQYYLKTGTCKFGPTCKFHHPR 138 5799********************96 PP | |||||||
3 | zf-CCCH | 31.6 | 2.8e-10 | 160 | 184 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+Cky ++CkF+H++ Pavir.5KG726700.1.p 160 EKECAYYLKTGQCKYANTCKFHHPE 184 679********************96 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 311 | 336 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ Pavir.5KG726700.1.p 311 DQPECQYYMKTGDCKFGAVCKFHHPR 336 689*********************96 PP | |||||||
5 | zf-CCCH | 42.6 | 9.9e-14 | 356 | 382 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G++CkF H++ Pavir.5KG726700.1.p 356 PGEELCKFYSRYGICKFGANCKFDHPM 382 689**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.197 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 66 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-5 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.751 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 114 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 115 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 117 | 139 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 157 | 185 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-7 | 160 | 184 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 163 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 312 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 315 | 335 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.591 | 355 | 383 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-8 | 355 | 382 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 356 | 382 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-11 | 357 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 359 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MDDAGRASAP AAVTVSATAA PVHPPPSATA ADTPSPDPSA LYGEGMWEQM AMNSGATMQP 60 GPYPERQGEP DCTYYLRTGL CRFGMCCRFN HPPDRNLAIA SARMKGEYPE RLGQPECQYY 120 LKTGTCKFGP TCKFHHPREK AGIAGRVQLN TLGYPLRPNE KECAYYLKTG QCKYANTCKF 180 HHPELFNVVP SSRGSPIYPS VHSSASTGPQ SYTGTMASWA FPRASFIPSP RWQSPSNYAP 240 MIVPQGLVQV PSWNSYPGQM QSPGAQQTYG TSQQGEASTG NQGMLSPYRS SSFPVPQYAL 300 QRENVFPERP DQPECQYYMK TGDCKFGAVC KFHHPRVRSL PPPDCVLSPM GLPIRPGEEL 360 CKFYSRYGIC KFGANCKFDH PMATPMGVYA YGFSASASAS ASTNVPMARR LLGSPSGSGY 420 TS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3339 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG726700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037035 | 0.0 | BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds. | |||
GenBank | JX428467 | 0.0 | JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971057.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | K3XI36 | 0.0 | K3XI36_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J05626.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-146 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG726700.1.p |
Publications ? help Back to Top | |||
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