PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG719000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 411aa    MW: 45210.7 Da    PI: 8.7848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG719000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-105480127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C +++rtG C++G +C+F+H+p
  Pavir.5KG719000.2.p 54 PGEPDCTYYLRTGLCRFGMSCRFNHPP 80
                         5789*********************97 PP
2zf-CCCH38.22.5e-12101125327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Pavir.5KG719000.2.p 101 QPECQYYLKTGTCKFGPTCKFHHPR 125
                          799********************96 PP
3zf-CCCH31.72.7e-10147171327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C ++++tG+Cky ++CkF+H++
  Pavir.5KG719000.2.p 147 EKECAYYLKTGQCKYANTCKFHHPE 171
                          679********************96 PP
4zf-CCCH39.41e-12298323227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG Ck+G+ CkF+H++
  Pavir.5KG719000.2.p 298 DQPECQYYMKTGDCKFGAVCKFHHPR 323
                          689*********************96 PP
5zf-CCCH42.79.6e-14343369127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++elC+f++r+G+Ck+G++CkF H++
  Pavir.5KG719000.2.p 343 PGEELCKFYSRYGICKFGANCKFDHPM 369
                          689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9715381IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-55380IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-85580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-55881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-45979IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.69498126IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-698125IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10101125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5104126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5144171IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4144171IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4150170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023296324IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5296323IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5299323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4302322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591342370IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8342369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6343369IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-11344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5346367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MFHIAPLLIF VFQIILVSSQ VVSVCAMLVA EGMWEQMAMN SGATMQPGPY PERPGEPDCT  60
YYLRTGLCRF GMSCRFNHPP DRNLAIASAR MKGEYPERVG QPECQYYLKT GTCKFGPTCK  120
FHHPREKAGI AGRVQLNTLG YPLRPNEKEC AYYLKTGQCK YANTCKFHHP ELFNVVPSSR  180
GSPIYPSVHS SASTGPQSYP GTMASWAFPR ASFIPSPRWQ SPSNYAPMIV PQGLVQVPSW  240
NSYPGQLQSP GVQQTYGTSQ QGEASSGNQG MLSPYRSSSF PVPQYALQRE NVFPERPDQP  300
ECQYYMKTGD CKFGAVCKFH HPRVRSLPPP DCVLSPMGLP IRPGEELCKF YSRYGICKFG  360
ANCKFDHPMA APMGVYAYSF SASASPASAS TNVPMARQLL GSPSGSGYPS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.33390.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG719000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370350.0BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds.
GenBankJX4284670.0JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817371.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2T7DCI10.0A0A2T7DCI1_9POAL; Uncharacterized protein
STRINGPavir.Ea03945.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-150zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]