PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG719000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 429aa MW: 46372.4 Da PI: 8.5829 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.3e-10 | 72 | 98 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H+p Pavir.5KG719000.1.p 72 PGEPDCTYYLRTGLCRFGMSCRFNHPP 98 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 119 | 143 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Pavir.5KG719000.1.p 119 QPECQYYLKTGTCKFGPTCKFHHPR 143 799********************96 PP | |||||||
3 | zf-CCCH | 31.6 | 2.8e-10 | 165 | 189 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+Cky ++CkF+H++ Pavir.5KG719000.1.p 165 EKECAYYLKTGQCKYANTCKFHHPE 189 679********************96 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 316 | 341 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ Pavir.5KG719000.1.p 316 DQPECQYYMKTGDCKFGAVCKFHHPR 341 689*********************96 PP | |||||||
5 | zf-CCCH | 42.6 | 1e-13 | 361 | 387 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G++CkF H++ Pavir.5KG719000.1.p 361 PGEELCKFYSRYGICKFGANCKFDHPM 387 689**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.971 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-8 | 73 | 98 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 76 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 77 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 116 | 144 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 116 | 143 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-10 | 119 | 143 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 120 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-5 | 122 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-7 | 165 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 168 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 316 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 317 | 341 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 320 | 340 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-8 | 360 | 387 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.591 | 360 | 388 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 361 | 387 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-11 | 362 | 387 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 364 | 385 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MDEAGRASAP AAVTVSATTA PAHPPPSATA AAAAATDTSS PDPSALYGEG MWEQMAMNSG 60 ATMQPGPYPE RPGEPDCTYY LRTGLCRFGM SCRFNHPPDR NLAIASARMK GEYPERVGQP 120 ECQYYLKTGT CKFGPTCKFH HPREKAGIAG RVQLNTLGYP LRPNEKECAY YLKTGQCKYA 180 NTCKFHHPEL FNVVPSSRGS PIYPSVHSSA STGPQSYPGT MASWAFPRAS FIPSPRWQSP 240 SNYAPMIVPQ GLVQVPSWNS YPGQLQSPGV QQTYGTSQQG EASSGNQGML SPYRSSSFPV 300 PQYALQRENV FPERPDQPEC QYYMKTGDCK FGAVCKFHHP RVRSLPPPDC VLSPMGLPIR 360 PGEELCKFYS RYGICKFGAN CKFDHPMAAP MGVYAYSFSA SASPASASTN VPMARQLLGS 420 PSGSGYPS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3339 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG719000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037035 | 0.0 | BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds. | |||
GenBank | JX428467 | 0.0 | JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971057.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | K3XI36 | 0.0 | K3XI36_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea03945.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-149 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG719000.1.p |
Publications ? help Back to Top | |||
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