PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG682500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 262aa MW: 26844.3 Da PI: 7.8357 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138 | 3.2e-43 | 34 | 132 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+ql Pavir.5KG682500.3.p 34 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQL 123 7***************************************************************************************** PP DUF260 91 kaelallke 99 +++la++k Pavir.5KG682500.3.p 124 QQDLARAKY 132 ****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.729 | 33 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-43 | 34 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009799 | Biological Process | specification of symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005654 | Cellular Component | nucleoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MASSSVPAPS GSVITVASSS SSAAAAAVCG TGSPCAACKF LRRKCQPDCV FAPYFPPDNP 60 QKFVHVHRVF GASNVTKLLN ELHPFQREDA VNSLAYEADM RLRDPVYGCV GVISILQHNL 120 RQLQQDLARA KYELSKYQAA AAASASTGPN GPQAMAEFIG SAMPNGAHNF INIGHSPALG 180 SIGGGSPAIF GQEQFASAQM LSRSYDGEPV ARLGINGGYE FGYSTAMGGA AGPVSGLGML 240 GISPFLKSGT AGGDEKPSAG Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-53 | 24 | 137 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-53 | 24 | 137 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00211 | DAP | Transfer from AT1G65620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG682500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY940681 | 0.0 | AY940681.1 Zea mays ASYMMETRIC LEAVES2 mRNA, complete cds. | |||
GenBank | EU966092 | 0.0 | EU966092.1 Zea mays clone 291632 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817833.1 | 1e-166 | LOB domain-containing protein 6 | ||||
Refseq | XP_025817835.1 | 1e-166 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 1e-157 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A2T7DDD6 | 1e-167 | A0A2T7DDD6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RGB0 | 1e-167 | A0A3L6RGB0_PANMI; LOB domain-containing protein 6 | ||||
STRING | Pavir.Ea03589.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 6e-59 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG682500.3.p |